Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0583 ATGAATGCAGATATCAACTCCGTCGCCATTGCCAGTAGCAGCACTCCGCTGGACCTCGCTCTTCTTCCATATGAACTCCGAATGGTCCAAACAGCTACTACTTTCAACAACTCCATTTCCGCCTCCAAGCGCCGCCACAACCCGCGCAAGAAGCGGTCCAGAAACAAAAACGACTCCGCCGTCGCCGTCGCCGTCGTCCGTTCCAAGGCAAAGTATAGCAAGAATCCCGATCCTAGTGCGCGGAAGATCACTCCTCAGTGTACTGAATGTGGGAAGACATTTTGTTCGGATAAGGCGCTTTTCGGTCACATGAGGTGTCATCCAGAACGTCAATGGCGGGGGATTAATCCGCCGCCTATTTTCCGTCGCCCGATTTCGGTTTCTCCTTCTAGCCCTATCGCCGATTTAGAAGAATCTCCGATTATTACCGAAGAAGATCAGGACATCGCCGATTGCTTGTTAATGCTCGCCAGTGGCCCTAGTTTCATCGATAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGCAAGAAAGTGTTTGGATCGCACCAGGCGCTTGGAGGGCATAGGGCAAGTCACAAGAATGTGAAAGGCTGTTTCGCCATAGCCAAGAGCGATGAAGAAACAGAGGAAGATTCTCTGTTTAGGGATTGTGGCCATCCGATGATTTTAGGAATAGGGCATAAGTGTAGTATATGTACTAGGGTTTTTGCCTCTGGTCCAGCACTTGTTGGGCACAAGAGATGCCATTGGGAGGGAATGGAGGAGAATGCCATTGTTAAATTGGACCTGAACATGCCTGCTCCTGTTGAAGATGGCTCATCTTCTTCATATTCTTCTGACCTCACTCTGGATCTCAGAAGTGAGAACCTTTGTGATGCTCTGATGATATGTGGCTGCTTGTTCTCTTATGAACCAATCTGTTTAATTTAA 933 48.66 MNADINSVAIASSSTPLDLALLPYELRMVQTATTFNNSISASKRRHNPRKKRSRNKNDSAVAVAVVRSKAKYSKNPDPSARKITPQCTECGKTFCSDKALFGHMRCHPERQWRGINPPPIFRRPISVSPSSPIADLEESPIITEEDQDIADCLLMLASGPSFIDRVSDCRFECSSCKKVFGSHQALGGHRASHKNVKGCFAIAKSDEETEEDSLFRDCGHPMILGIGHKCSICTRVFASGPALVGHKRCHWEGMEENAIVKLDLNMPAPVEDGSSSSYSSDLTLDLRSENLCDALMICGCLFSYEPICLI 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5143356 5145340 - Tan0012909.1 Tan02g0583 743209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0583 310 SMART c2h2final6 228 250 IPR013087 -
Tan02g0583 310 SMART c2h2final6 171 193 IPR013087 -
Tan02g0583 310 SMART c2h2final6 85 107 IPR013087 -
Tan02g0583 310 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Tan02g0583 310 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 32 287 - -
Tan02g0583 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 250 IPR013087 -
Tan02g0583 310 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Tan02g0583 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Tan02g0583 310 MobiDBLite consensus disorder prediction 37 60 - -
Tan02g0583 310 Gene3D Classic Zinc Finger 168 250 - -
Tan02g0583 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Tan02g0583 310 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Tan02g0583 310 Pfam C2H2-type zinc finger 228 252 IPR013087 -
Tan02g0583 310 Pfam C2H2-type zinc finger 170 194 IPR013087 -
Tan02g0583 310 Pfam C2H2-type zinc finger 87 109 IPR013087 -
Tan02g0583 310 SUPERFAMILY beta-beta-alpha zinc fingers 86 193 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0583 Tan-Chr2:5143356 Tan10g0037 Tan-Chr10:740094 5.50E-23 dispersed
Tan02g0583 Tan-Chr2:5143356 Tan05g1056 Tan-Chr5:8893069 7.10E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26700 PF13912 zf-C2H2_6 8.30E-08 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0583 - - - 0.0