Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0585 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGAGGATGGTGCCGATGGTGAAGAAGGAGGAGTTAGTTTTTCTGTTAATATTCGATGTTCTAATGGTTCGAAATTTGAGGTGAGGACGACTCTTGATTCCACGGTTGGGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAGCAGCGGTTGATCTACAAGGGTCGCATCCTGAAGGACGATCAGACCTTAGTCAGTTATGGGTTACAGGCAGATCACACAATTCACTTGGTTCGTGGGTTTGCCCAACCTTCGTCAACACCTTCTGCACCTGCTTCTAATGCTAATAGTAGAAGTTCTGAAACTTCTCCTGGCGTTACAAGAGGTGTTGGTTCCACTGAGAGTTTTGGAAATGCTGGCCTTGGTGCATCTTTATTTCCTGGACTGGGTTTCAATCCTCTCGGTGGGGGTGGTGGAGCTGGACTTCCCGAGTTTGAACAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCCGACTTGATGCGGACCTTAATTATGAGCAATCCTCAGATGAGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTTAATGACCCTGGTATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCAGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCTATGAGTAACATCGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGGATGTATGAAAATGTTCAGGAGCCATTTCTGAATGCAACGACGATGGCTGGAAATGCTGGGAATGATTTGGGTTCAAACCCATTTGCAGCTCTCCTGGCAAACCAAGGGAGTGCACAAGCAAGGAATGAGTCTAATAATTCTTCTACTACAGGATCTGAAACAACAGGAAATGCTGCTCCAAATACAAATCCACTTCCTAATCCCTGGGGAGGAACTCAGACAACAACCAATCGGCCTACTCCAGCAGGTGATGCAAGGCCTCCTGGTATTGGGGCTTTAGGAGGGGCCGGTCACACAAATGTGGACCGTTCTGCTGGTGGCTTGCCGGATGCGGCTCAATTGAATCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGCCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGTTACGTAGCATGGTTGATATGAATCCTCAATTAAGAGAAATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCAATTCAGCAGTCACTCCTCTCTACCTTAAATCGACAGCCATCATCTCAAGATTCTGCTCAACCAGGTGCTGCTGCAGGTGTTCCTAACACTGCTGGATTGGAGATGTTGATGAACCTGTTTGGTGGGCTTGGCGCTGGCGGGTTGGCTACTCCAAACAATCCCAACGTGCCCCCAGAAGTACAATATGCAACTCAACTTTCACAGCTCCAAGAGATGGGTTTCTTTGACACCCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGAAACGTCCATGCTGCTGTCGAGCGACTGCTGGGAAATCTTGGGCAGTAA 1647 46.63 MGADGDSSEHRVEDGADGEEGGVSFSVNIRCSNGSKFEVRTTLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHLVRGFAQPSSTPSAPASNANSRSSETSPGVTRGVGSTESFGNAGLGASLFPGLGFNPLGGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLGSNPFAALLANQGSAQARNESNNSSTTGSETTGNAAPNTNPLPNPWGGTQTTTNRPTPAGDARPPGIGALGGAGHTNVDRSAGGLPDAAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSTLNRQPSSQDSAQPGAAAGVPNTAGLEMLMNLFGGLGAGGLATPNNPNVPPEVQYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5152147 5156737 + Tan0006566.1 Tan02g0585 743211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0585 548 SUPERFAMILY UBA-like 502 544 IPR009060 GO:0005515(InterPro)
Tan02g0585 548 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Tan02g0585 548 PANTHER UBIQUILIN 23 544 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Tan02g0585 548 SMART CBM 201 240 IPR006636 -
Tan02g0585 548 SMART CBM 148 188 IPR006636 -
Tan02g0585 548 SMART CBM 371 403 IPR006636 -
Tan02g0585 548 SMART CBM 407 442 IPR006636 -
Tan02g0585 548 Pfam Ubiquitin family 27 95 IPR000626 GO:0005515(InterPro)
Tan02g0585 548 ProSiteProfiles Ubiquitin domain profile. 25 94 IPR000626 GO:0005515(InterPro)
Tan02g0585 548 CDD UBA_PLICs 506 544 - -
Tan02g0585 548 MobiDBLite consensus disorder prediction 98 129 - -
Tan02g0585 548 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 499 545 IPR015940 -
Tan02g0585 548 MobiDBLite consensus disorder prediction 299 344 - -
Tan02g0585 548 PRINTS Ubiquitin signature 56 76 IPR019956 -
Tan02g0585 548 PRINTS Ubiquitin signature 77 98 IPR019956 -
Tan02g0585 548 FunFam Ubiquitin domain-containing protein DSK2b 489 547 - -
Tan02g0585 548 Pfam UBA/TS-N domain 506 542 IPR015940 -
Tan02g0585 548 CDD Ubl_Dsk2p_like 26 97 - -
Tan02g0585 548 SMART uba_6 506 544 IPR015940 -
Tan02g0585 548 MobiDBLite consensus disorder prediction 1 18 - -
Tan02g0585 548 Gene3D - 488 547 - -
Tan02g0585 548 MobiDBLite consensus disorder prediction 1 23 - -
Tan02g0585 548 Gene3D - 23 110 - -
Tan02g0585 548 SMART ubq_7 25 96 IPR000626 GO:0005515(InterPro)
Tan02g0585 548 MobiDBLite consensus disorder prediction 299 370 - -
Tan02g0585 548 FunFam Ubiquitin domain-containing protein DSK2b 22 109 - -
Tan02g0585 548 Gene3D - 196 254 - -
Tan02g0585 548 SUPERFAMILY Ubiquitin-like 25 113 IPR029071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0585 K04523 - - csv:101210644 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0585 Tan-Chr2:5152147 Tan08g0351 Tan-Chr8:3123604 1.50E-07 dispersed
Tan01g2369 Tan-Chr1:28828719 Tan02g0585 Tan-Chr2:5152147 5.20E-149 transposed
Tan01g5081 Tan-Chr1:116292330 Tan02g0585 Tan-Chr2:5152147 2.30E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39