Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0605 ATGCCTTTCTTCATCTCCCTTCTCTTCCTCTCTCTCATCTCTTCTTCCTCTGCTTGCGATCGCTGTGTTCATCAGGCCAAAGCCGCCTTCTACCAAGACGAAGCCGCCGGTGCATACAGAGGCGCCTGTGGCTATGGCGATCTAACATCGGAGCTCTCTAATGGCTACTTCTCGGCCATCATGCCTCCTCTTTACAAGTACGGCGCCGGCTGCGGCGCCTGTTTTCAAGTAAGGTGCAAGAATGAGAAAATTTGCAGCAAAGAAGGGACCAAAATTGTTGTGACGGATCGAAATGACAACACTTATACAGGGCTTGTTCTTAGCCAGAAGGGATTTGCGGAAATGGCTGTGACTGGAAAAGATGAATTGCTTCTGAGTTATGGAGTTGTGGACGTGGAATTCAAAAGGATTCCTTGTGAGTACAAGAACACAAACTTGTTGGTTAGAGTGGAAGAGTGGAGTCAATATCCCAATTATTTAGCCATGAAATTGCTTTACCAAGGTGGCCAAACAGAAATAGTAGCAGTCGATATAGCTCAGGTGGGTTATTCGAATTGGGATTATATGGGTAGGAATTATGGAGCTGTTTGGGAGACTAAAAAATCCGTACCAAAAGGACCATTACAATTACGATTCGTAGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAATATGTACTCCCAGCTGATTGGAGACCTGGACTAATTTACGATACTGGAATTCAAATCTACGACATTGCTAAAGAGGGTTGTCCGGCGGAGCAATGTGGTGATGGACAATGGAGAAGACGATAG 801 45.32 MPFFISLLFLSLISSSSACDRCVHQAKAAFYQDEAAGAYRGACGYGDLTSELSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIVVTDRNDNTYTGLVLSQKGFAEMAVTGKDELLLSYGVVDVEFKRIPCEYKNTNLLVRVEEWSQYPNYLAMKLLYQGGQTEIVAVDIAQVGYSNWDYMGRNYGAVWETKKSVPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGIQIYDIAKEGCPAEQCGDGQWRRR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5380877 5382869 - Tan0003119.1 Tan02g0605 743231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0605 266 Gene3D - 141 246 IPR036749 -
Tan02g0605 266 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Tan02g0605 266 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Tan02g0605 266 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Tan02g0605 266 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Tan02g0605 266 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Tan02g0605 266 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Tan02g0605 266 Gene3D - 10 140 IPR036908 -
Tan02g0605 266 Pfam Expansin C-terminal domain 150 230 IPR007117 -
Tan02g0605 266 PANTHER EXPANSIN-B3 7 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Tan02g0605 266 Pfam Lytic transglycolase 60 133 IPR009009 -
Tan02g0605 266 SUPERFAMILY Barwin-like endoglucanases 9 142 IPR036908 -
Tan02g0605 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Tan02g0605 266 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0605 266 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0605 266 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0605 266 PRINTS Major pollen allergen Lol pI signature 59 70 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0605 266 PRINTS Major pollen allergen Lol pI signature 79 89 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0605 266 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0605 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0605 Tan-Chr2:5380877 Tan02g0613 Tan-Chr2:5476003 2.20E-100 dispersed
Tan02g0605 Tan-Chr2:5380877 Tan02g0608 Tan-Chr2:5408725 2.10E-79 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0605 - - - 0.0