Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0608 ATGGCTTGGTTTTTCACCTTCTTCCTCTTTGTCCTTGTTTCTTCCGCTAATGCTTGTGATCGTTGTATTTTTCAATCGAAGGCTGCTCATTACTATGGAGATGCACCTACTTCATATGGAGGCGCATGTGGGTATGGAAATTTGGCCTTGGAAATGTCCCAAGGATATTTTGCAGCTGCTGTTCCTTCAATCTACCGTCAAGGAATGGGCTGTGGTGCCTGTTATCAAATACGATGCAAGAATGAAACATTGTGTAACACAGTAGGAACAAAAATAGTTTTGACAGATCAAAATGCTGATAACAGAACAGATTTTGTGATCAGTAAAAAAGCTTTTTCAGCTATGGCATTGAAGGGCAAAGGCCAAGAACTTTTGAAAACTGGAATTGTTGACGTTGAATACAAGAGGATACCTTGTGAATACAATAAAAATTTATTGGTACAAGTGGTAGAATGGAGCCACAAACCATATTATTTGGCTATTAAATTGCTATACCAAGGTGGCCAAACAGACATAACAGCAGTCTACATAGCAGCTCAGGACGGTTCGGGTGACGGGCACTACATGAAAAGAAACTATGGACCTATTTGGGATACGAATAATGTGCCTGATGGGGCAATCAAACTAGTGGTGATGGTTGTTTCGGGGTACAATAATGGAAGGGGGATCATAATAAATTATGCACTTCCTACTGATTGGAAAAATGGAGAAATTTACGATACTGGAATTCAAATTAAGGATATTGCTTCTGAGTCTTGCAATCCTTGGCGATGTGGTGAACAACCATGGAAATAA 795 39.75 MAWFFTFFLFVLVSSANACDRCIFQSKAAHYYGDAPTSYGGACGYGNLALEMSQGYFAAAVPSIYRQGMGCGACYQIRCKNETLCNTVGTKIVLTDQNADNRTDFVISKKAFSAMALKGKGQELLKTGIVDVEYKRIPCEYNKNLLVQVVEWSHKPYYLAIKLLYQGGQTDITAVYIAAQDGSGDGHYMKRNYGPIWDTNNVPDGAIKLVVMVVSGYNNGRGIIINYALPTDWKNGEIYDTGIQIKDIASESCNPWRCGEQPWK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5408725 5411335 - Tan0015481.1 Tan02g0608 743234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0608 264 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Tan02g0608 264 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Tan02g0608 264 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Tan02g0608 264 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Tan02g0608 264 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Tan02g0608 264 Gene3D - 12 140 IPR036908 -
Tan02g0608 264 PANTHER EXPANSIN-B3 7 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Tan02g0608 264 SUPERFAMILY PHL pollen allergen 150 240 IPR036749 -
Tan02g0608 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 241 IPR007117 -
Tan02g0608 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Tan02g0608 264 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Tan02g0608 264 Gene3D - 141 246 IPR036749 -
Tan02g0608 264 CDD DPBB_EXLA_N 14 141 - -
Tan02g0608 264 Pfam Lytic transglycolase 59 134 IPR009009 -
Tan02g0608 264 Pfam Expansin C-terminal domain 154 216 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0608 Tan-Chr2:5408725 Tan02g0613 Tan-Chr2:5476003 1.60E-103 dispersed
Tan02g0605 Tan-Chr2:5380877 Tan02g0608 Tan-Chr2:5408725 2.10E-79 proximal
Tan02g0608 Tan-Chr2:5408725 Tan02g0610 Tan-Chr2:5427190 7.40E-61 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0608 - - - 0.0