Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0612 ATGTGTGGATTTTTCACCTTCCTCCTCTTCTTGCTTGTCTCTTCTACTGCTGCTTCTTTTCCTCCTTGTAATCGTTGCGTTCATCAATCCAAAGCGACTAATTACTACGAAGACTCACCTACTTCATATGGAGGTGCTTGTGGTTATGGAAATTTGGCATTAGAAATCTCCCAAGGGTACTTTGCAGCTGCAGTGCCTTCTCTTTATAGACAAGGAGCAGGTTGTGGTGCCTGCTATCAGGTAAGATGCAAGGACAAACGTCTGTGCAATACAGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGACAATAGAACAGATGTTGTTCTAAGTAGGAAAGCTTTCTCTGCGATGGCTTTAAAAGGAAAAAGCCAACAACTTTTAAATATTGGACTCCTTGATGTGGAATACAAGAGGGTGCCTTGTGAATATCAAAGTAGAAATTTGTTAGTGCGAGTCGAAGAATCAAGTTACAATCCCTTCAAATTGGCAATTAAGTTCTTGTACCAAGGTGGGCAAACAGACATAGTTGCTGTTGATATAGCTCAAGTCGGAACCTCCGATTGGAACCATATGAAGAGAAGTTATGGAGCTGTTTGGGACACTGAGAACGTGCCCGAAGGTGCATTACAACTGAGAATGGTGGTAACTTCAGGATATGATGGTAAATGGGTTTGGGCAAATTCTGTACTTCCTGCTGATTGGAAAGTTGGAGTGATCTACGACACTCGAGTTCAAATCAACGATATTGCCAAAGAGAGTTGTCCTCCATGGCAATGTGGAGATGGGCAATGGAAATAA 804 41.67 MCGFFTFLLFLLVSSTAASFPPCNRCVHQSKATNYYEDSPTSYGGACGYGNLALEISQGYFAAAVPSLYRQGAGCGACYQVRCKDKRLCNTAGTKIVLTDQNNDNRTDVVLSRKAFSAMALKGKSQQLLNIGLLDVEYKRVPCEYQSRNLLVRVEESSYNPFKLAIKFLYQGGQTDIVAVDIAQVGTSDWNHMKRSYGAVWDTENVPEGALQLRMVVTSGYDGKWVWANSVLPADWKVGVIYDTRVQINDIAKESCPPWQCGDGQWK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5443750 5458145 - Tan0011769.1 Tan02g0612 743238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0612 267 CDD DPBB_EXLA_N 23 145 - -
Tan02g0612 267 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576(InterPro)
Tan02g0612 267 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Tan02g0612 267 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
Tan02g0612 267 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576(InterPro)
Tan02g0612 267 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Tan02g0612 267 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0612 267 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0612 267 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0612 267 Gene3D - 145 249 IPR036749 -
Tan02g0612 267 Pfam Expansin C-terminal domain 152 233 IPR007117 -
Tan02g0612 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Tan02g0612 267 PANTHER EXPANSIN-B3 7 250 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Tan02g0612 267 SUPERFAMILY Barwin-like endoglucanases 17 146 IPR036908 -
Tan02g0612 267 Gene3D - 15 144 IPR036908 -
Tan02g0612 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 244 IPR007117 -
Tan02g0612 267 Pfam Lytic transglycolase 63 138 IPR009009 -
Tan02g0612 267 SUPERFAMILY PHL pollen allergen 148 243 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0612 Tan-Chr2:5443750 Tan09g0709 Tan-Chr9:56770231 2.90E-97 dispersed
Tan02g0610 Tan-Chr2:5427190 Tan02g0612 Tan-Chr2:5443750 9.60E-71 proximal
Tan02g0612 Tan-Chr2:5443750 Tan02g0613 Tan-Chr2:5476003 2.00E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0612 - - - 0.0