Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0613 ATGGCTTGGTTTCTTAGCTTGTTCTTTTTTGTTCTCATCTCTTCTGCTACTGCTTGTGATCGTTGTGTTCATCAATCTAAGGCTACTCATTATTATGGCGATTCGCCTACTTCATATGGAGGAGCATGTGGTTATGGCGACTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCCCTCTACAAACAAGGAGCTGGTTGTGGTGCATGTTTTCAGGTAAGATGTAAAGACAAAAGATTGTGCAATACAGCAGGGAGTAAAGTAGTATTGACAGACCAAAATTACGATACTAGAGCAGATTTTGTTCTCAGTAGAAAAGCTTTTTCTGCCATGGCTTTAAAAGGAAAGGGTCAAGAACTTTTGAATTCTGGAATTGTGGATGTAGAATATAAGAGGATACCTTGTGCATACAAAAACAAAAATTTGGCTGTTCGAGTTGAAGAATCAAGTTATAACCCAAACTATTTAGCCATTAAGCTTCTCTACCAAGGTGGCCAAACAGAGATAGTAGCTGTTGAAATAGCTGAGGTTGGTTCATATGATTGGGTGAGCTTAAGCAGAAGCTATGGAGCTGTTTGGGATACAAATAAAGTACCAAGAGGAGCACTAAAAATGAGAATGGCAATAACTTCAGGATACGATGGAAAATGGGTGTCAGCAGAATATGTTCTTCCTGCTGATTGGAAAACTGGAGTCATTTACGATACTGGAGTTCAAATTTACGATGTTGCCAAAGAGGGTTGTCCGACATCGCAGTGTGGTGATAGACCATGGAAATGA 792 40.03 MAWFLSLFFFVLISSATACDRCVHQSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGSKVVLTDQNYDTRADFVLSRKAFSAMALKGKGQELLNSGIVDVEYKRIPCAYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAEVGSYDWVSLSRSYGAVWDTNKVPRGALKMRMAITSGYDGKWVSAEYVLPADWKTGVIYDTGVQIYDVAKEGCPTSQCGDRPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5476003 5478345 - Tan0022289.1 Tan02g0613 743239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0613 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Tan02g0613 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Tan02g0613 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Tan02g0613 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Tan02g0613 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Tan02g0613 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Tan02g0613 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Tan02g0613 263 PANTHER EXPANSIN-B3 7 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Tan02g0613 263 Pfam Lytic transglycolase 59 134 IPR009009 -
Tan02g0613 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Tan02g0613 263 Gene3D - 141 245 IPR036749 -
Tan02g0613 263 CDD DPBB_EXLA_N 14 141 - -
Tan02g0613 263 Gene3D - 12 140 IPR036908 -
Tan02g0613 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0613 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0613 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0613 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan02g0613 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Tan02g0613 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0605 Tan-Chr2:5380877 Tan02g0613 Tan-Chr2:5476003 2.20E-100 dispersed
Tan02g0608 Tan-Chr2:5408725 Tan02g0613 Tan-Chr2:5476003 1.60E-103 dispersed
Tan02g0610 Tan-Chr2:5427190 Tan02g0613 Tan-Chr2:5476003 1.20E-68 dispersed
Tan02g0613 Tan-Chr2:5476003 Tan09g0709 Tan-Chr9:56770231 4.00E-99 dispersed
Tan02g0612 Tan-Chr2:5443750 Tan02g0613 Tan-Chr2:5476003 2.00E-114 tandem
Tan02g0613 Tan-Chr2:5476003 Tan02g0614 Tan-Chr2:5511925 5.60E-85 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0613 - - - 0.0