Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0615 ATGGCTTTGTTTGTTTGCATTCTCTTCTTCTTCCTCGCCTCATCTGCCTCTGCTTGTGATCGCTGTGTTCACCATTCAAAAACTGCCCATTTTGCAAATGATTCACCACTTTCATCTGGGGCTTGTGGCTATGGTCCCTTAGCTCTTGGCTTCCTCAACGGACACCTTGCTGCGGGTGTCCCTTCCCTTTATAAAGAAGGGGTTCGTTGTGGCGCATGCTATCAGATAAGGTGCAAAGACAAGAAACTTTGCAGCAGAGCCGGGACCAAAATCATTTTGACTGATCTGAATTTACGCAGCAATAGGACTGATTTTATTTTGAGCAATAAAGCTTTTTCTGCCATGGCTCTGAAGGGCCAAGATAAGAATATTTTGAGACGTGGGACTCTCGAGGTTGAATACAAGAGGATGCCTTGTGAATACAAAAAACAAAATCTGTCAGTAAGAATTGAAGAGTCAAGCCAAAAGCCACATCACATGGCTGTTAAGTTTCTATTCCAAGGTGGTCAGACAGATATGGTACTCGTTCACCTTCATCCGGTGGATTCGGGAAGAACGGCGTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAACAGAAACGGCGCCGGAAGCGGCGGTGGTGTTTCAAATAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGAGGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGTTGCAGACAGTGCGACGAAGGCCATTGGTGA 792 48.61 MALFVCILFFFLASSASACDRCVHHSKTAHFANDSPLSSGACGYGPLALGFLNGHLAAGVPSLYKEGVRCGACYQIRCKDKKLCSRAGTKIILTDLNLRSNRTDFILSNKAFSAMALKGQDKNILRRGTLEVEYKRMPCEYKKQNLSVRIEESSQKPHHMAVKFLFQGGQTDMVLVHLHPVDSGRTAFMSRRHGTAVWETETAPEAAVVFQIRVISGFDGMWVRAERAVPADWKPGMIYDLGVQMDAIAKGQESCRQCDEGHW 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5528380 5533186 - Tan0007199.1 Tan02g0615 743241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0615 263 PANTHER EXPANSIN-B3 4 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Tan02g0615 263 Gene3D - 13 140 IPR036908 -
Tan02g0615 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Tan02g0615 263 Pfam Lytic transglycolase 57 134 IPR009009 -
Tan02g0615 263 Gene3D - 141 245 IPR036749 -
Tan02g0615 263 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Tan02g0615 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Tan02g0615 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Tan02g0615 263 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Tan02g0615 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Tan02g0615 263 CDD DPBB_EXLA_N 14 141 - -
Tan02g0615 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Tan02g0615 263 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Tan02g0615 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0615 Tan-Chr2:5528380 Tan09g0709 Tan-Chr9:56770231 1.00E-62 dispersed
Tan02g0614 Tan-Chr2:5511925 Tan02g0615 Tan-Chr2:5528380 7.00E-58 tandem
Tan02g0615 Tan-Chr2:5528380 Tan02g0616 Tan-Chr2:5535007 6.70E-78 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0615 - - - 0.0