Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0616 ATGTCTCTCTTACTTTCATTTCTCTTCTTCTTCTTCTTCTTCCTCGTTTCATCTGCCACTGAATGTGATCATTGTCCACACCAATCCAAGGCTGCTTATTTCTCCCAAGATTCATCACTTTCATGTGGAGCTTGTGGCTATGGATCTTTGGCATTGAGCTTCTTTAATGGACACCTTGCAGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTCGATGTGGCGCTTGCTATCAGATTAAGTGCAAGAATAAAGGGCTTTGTTCAAAAGAAGGGACTAAAGTTATATTGACTGATTTGAATCACAGTAATAAAACTGATTTTGTTTTGAGTAAGAAAGCTTTCTCTGCAATGGCTCAAAAGGGCAAAGGGAAACAGATTCTGAAACAAGGGATTGTAGATGTTGAATATAAGAGGGTTCCATGTGAATACAAAAAACAAAACATGTCAGTGCGAATCCACGAATCAAGCAGAAGACCCCATTACTTGGCCATTACATGGTTATATGTAGCTGGTCAAACAGAAATATCAGAAGTTCATGTATCTTTGGATGGCGCCCTTGTGTCAACTGATATGAGAAGATCAAGAAAGAATGGGGCAATTTGGGAAGCTGACTCAGTGCCTGTAGGGCCATTGAACTTCCAAATAAGGTTGTTTAATTCAAGTGATGCTCTGTGGTTTTTTACTTTGCAAGATATTCCTCAAGATTGGAAACTTGGCATCATTTATGATACTGGAATTCAAATTGGCCCGCAAGGGGAAGAAAGTTGTAGTCCATGTGATGAATTGAACAAGAAAAAAAAAAAAAAAAAACCATAG 816 38.97 MSLLLSFLFFFFFFLVSSATECDHCPHQSKAAYFSQDSSLSCGACGYGSLALSFFNGHLAAGVPSLYKDGARCGACYQIKCKNKGLCSKEGTKVILTDLNHSNKTDFVLSKKAFSAMAQKGKGKQILKQGIVDVEYKRVPCEYKKQNMSVRIHESSRRPHYLAITWLYVAGQTEISEVHVSLDGALVSTDMRRSRKNGAIWEADSVPVGPLNFQIRLFNSSDALWFFTLQDIPQDWKLGIIYDTGIQIGPQGEESCSPCDELNKKKKKKKP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5535007 5537319 - Tan0008688.1 Tan02g0616 743242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0616 271 SUPERFAMILY PHL pollen allergen 147 243 IPR036749 -
Tan02g0616 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 244 IPR007117 -
Tan02g0616 271 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576(InterPro)
Tan02g0616 271 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
Tan02g0616 271 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576(InterPro)
Tan02g0616 271 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576(InterPro)
Tan02g0616 271 CDD DPBB_EXLA_N 19 143 - -
Tan02g0616 271 SUPERFAMILY Barwin-like endoglucanases 11 144 IPR036908 -
Tan02g0616 271 Pfam Expansin C-terminal domain 149 221 IPR007117 -
Tan02g0616 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Tan02g0616 271 Gene3D - 16 142 IPR036908 -
Tan02g0616 271 Gene3D - 143 248 IPR036749 -
Tan02g0616 271 PANTHER EXPANSIN-B3 7 248 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Tan02g0616 271 SMART dpbb_1 60 136 IPR007112 -
Tan02g0616 271 Pfam Lytic transglycolase 60 136 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0616 Tan-Chr2:5535007 Tan09g0709 Tan-Chr9:56770231 4.30E-56 dispersed
Tan02g0615 Tan-Chr2:5528380 Tan02g0616 Tan-Chr2:5535007 6.70E-78 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0616 - - - 0.0