Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0642 ATGGATACGCTTAAGAAATCCTTCAAAAGCAATGTATCTTTCAAGCATACCAGGAAGATTTCTGCTGGTGGAACCGGTAGCGAAATCAATCACGAGGAGCTCCCCATTCTTCTCGATCACGAACCTACGGATAATCGTAATCGTCACAGGGATCGTCGCTCGGTGAATGATTGTGAACCATCTGACCGCACGGAGGTCATTCTCAAGATCGATGATGGCGGTTCTTCGGCTGTCTCCAGATCTATGGACTCTGACGGCAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAAAAATGATGGAATTGGGATTGGGGAAAGTGCGAGTAGGACTAGTGGTGCGAGAGCGAGTGATAGTGGTGATAGAAATGAGGGATTTGAATTTGTACAGCGTGGTTATGGTATGGATGATCCGCCGACGAGACTGATTGGTGAGTTTCTTCATAAGCAAAAAATTAGAGGCGAAACGGCTTTGGATATGGATTTGGAAATGGAGGAGCTGCGGCCGGATAGGATTATAACTCCTATGGCGGAGTCGCCGTTGAGTGGGACTTCTAAGGATCTTAAGGTTTCGTTTCAACCGGGTTCGACTGAGATTTCGAGCAATGAGTCGTTTCGAAGGCGGTATAAAGACTCCCGCGATTTTCAAGAAGAGTGCAAAGGAGGGCAATCACCATGGCAACAATCGCACCATGAACGTCGTGGTTCTTCGACTGTCTCTGGTGTTCAGAATGATTCTGTTGCTGAGGCTATGAGGTGTACATCTAACTTGTCTTTTCAGAGCGAGCTTTCGTTTCAGAGGAAATCAAATTTGCTCAGGGCGAAAACCAAGTCGAGATTGATAGACCCGCCTGCAGAACCAGACCACCTCTCCGGCCTCATTAAATCGGGACAGTTACGATCAGGGTTTCTCGGCAAGATTGACGACGACGATGACGACCCTTTTCTGGAGGACGACCTTCCAGACGATTTTAGAAGGGGCAAGTTCGATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTATAATCACTGCGGCTTTGGTTTGCACTCTTTCTATTCCTTATTTGAGGGCAAAGAGGCTCTGGGAGTTGGATTTATGGAAATGGGAGGTGATGATTTTGGTACTGATTTGCGGACGATTGGTATCTGGTTGGGGGATTAGAATCGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTCGTATATGGGGTTCGGAAGCCAGTACAGAATTGTCTATGGTTAGGCCTTGTTCTGATCGCTTGGAATTTGTTGTTTAATAAGCGGGTTGAGAATCACACCAACAGCAATATACTTAATTTTGTGAGGAAAATCTTAGTGTGTCTCTTGGTAAGCACATTGATTTGGCTAGTGAAAACCCTGATGGTGAAGGTGCTTGCATCTTGTTTCCATGTGAGCACATACTTCGATAGAATTCAGGAATCGTTGTTTAACCAATATATAATTGAGACGCTCTCAGGGCCACCACTGATTGAAATTAAGAAGAATGAGGAAGAAGAGGAGAGGATTGCCGCTGAAGTCCAGAAATTACAGAATGCAGGAATTACCATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTATAAAGAGTGGAAGGGCGATAGGCAGCGGGGGGACCCAAAAAAGTTCTTGTGGAAAAAGTTCCAAACTCTGTCGAGCACTTACTAAAAATGGAAACGATGGAATAACAATTGACCACTTGCACAAACTAAGTCCGAAGAATGTATCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAACAGATACCGGGGCCGTGTCTTGATGATGAATCTACTAGAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCGAAGAAGATTTTTCAGAACGTGGCTCGGCGAGGGTTCAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTTTTAAAATCATGAGTCTCTTTGAAGGAGCAACTGAAAGCTGGAGAATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGGAGAGCCCTAGCTTTAACATTGAATGATACCAAAACAGCTGTTCATAGACTGCACCGTATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTCATAGTACTAGGAATTGCCACCAGCAAATTCTTCCTCTTCGTTAGTTCTCAAATAGTGGTTGTGGCATTCATTTTTGGGAACACTTTAAGGACCATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCATTTGATGTCGGAGATCGATGTGAAATCGATGGAATGCAGATGATTGTAGAAGAAATGAACATCTTGACTACTGTGTTCTTGAGATACGACAACCTGAAGACTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTATCGTAGTCCCGACATGGGTGAATCTGTTGAATTCTGTGTCCATATAGCAACGCCAGCTGAGAAACTTGCTGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACACTGGTGTCCTTCTCCTATGATTGTGTTCAAGGATGTAGAAGGTTTAACCATGCTAAGACTGGCAGTCTGGCTGTCACACAGAATGAACCACCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAGGTCGTGAAGATCTGTCAAGAGTTTGACATTCAGTACCGTCTGTTGCCCCTCGATATCAATATCCATTCACTGCCTTCTTCTGCACCCTCCATTGCCTTTCCATCTAATTGA 2853 44.3 MDTLKKSFKSNVSFKHTRKISAGGTGSEINHEELPILLDHEPTDNRNRHRDRRSVNDCEPSDRTEVILKIDDGGSSAVSRSMDSDGNGGKVWRESRYDFWNKNDGIGIGESASRTSGARASDSGDRNEGFEFVQRGYGMDDPPTRLIGEFLHKQKIRGETALDMDLEMEELRPDRIITPMAESPLSGTSKDLKVSFQPGSTEISSNESFRRRYKDSRDFQEECKGGQSPWQQSHHERRGSSTVSGVQNDSVAEAMRCTSNLSFQSELSFQRKSNLLRAKTKSRLIDPPAEPDHLSGLIKSGQLRSGFLGKIDDDDDDPFLEDDLPDDFRRGKFDALTVLQWVSLIIITAALVCTLSIPYLRAKRLWELDLWKWEVMILVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWNLLFNKRVENHTNSNILNFVRKILVCLLVSTLIWLVKTLMVKVLASCFHVSTYFDRIQESLFNQYIIETLSGPPLIEIKKNEEEEERIAAEVQKLQNAGITIPPDLKAATFASIKSGRAIGSGGTQKSSCGKSSKLCRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPCLDDESTREIKSEREAKAAAKKIFQNVARRGFKYIYLDDLMRFMREDEVFKIMSLFEGATESWRISKSALKNWVVNAFRERRALALTLNDTKTAVHRLHRMVNVIFGILILILWLIVLGIATSKFFLFVSSQIVVVAFIFGNTLRTIFEAIIFLFVMHPFDVGDRCEIDGMQMIVEEMNILTTVFLRYDNLKTIIPNSVLATKLIHNFYRSPDMGESVEFCVHIATPAEKLAAMKQRIISYIEGHKEHWCPSPMIVFKDVEGLTMLRLAVWLSHRMNHQDSGERWARRSVLVEEVVKICQEFDIQYRLLPLDINIHSLPSSAPSIAFPSN 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5908929 5913817 + Tan0015190.1 Tan02g0642 743268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0642 950 MobiDBLite consensus disorder prediction 108 122 - -
Tan02g0642 950 MobiDBLite consensus disorder prediction 225 247 - -
Tan02g0642 950 MobiDBLite consensus disorder prediction 15 88 - -
Tan02g0642 950 MobiDBLite consensus disorder prediction 207 222 - -
Tan02g0642 950 Pfam Mechanosensitive ion channel, beta-domain 768 828 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan02g0642 950 MobiDBLite consensus disorder prediction 182 206 - -
Tan02g0642 950 FunFam Predicted mechanosensitive ion channel 779 828 - -
Tan02g0642 950 SUPERFAMILY Sm-like ribonucleoproteins 769 828 IPR010920 -
Tan02g0642 950 MobiDBLite consensus disorder prediction 108 138 - -
Tan02g0642 950 PIRSF Memb_At2g17000 44 949 IPR016688 -
Tan02g0642 950 MobiDBLite consensus disorder prediction 180 247 - -
Tan02g0642 950 MobiDBLite consensus disorder prediction 33 69 - -
Tan02g0642 950 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 41 941 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Tan02g0642 950 Gene3D - 779 828 IPR023408 -
Tan02g0642 950 Coils Coil 510 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0642 K22048 - - csv:101207426 1534.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0642 Tan-Chr2:5908929 Tan05g1093 Tan-Chr5:9643270 1.10E-234 dispersed
Tan02g0642 Tan-Chr2:5908929 Tan05g1092 Tan-Chr5:9643270 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan11g2174 . 1 503 Mechanosensitive Ion Channel Family AT4G00290 50.6 4.7e-133 472.2
Tan01g1484 . 58 725 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.8e-196 683.3
Tan02g2481 . 10 705 Mechanosensitive Ion Channel Family AT5G10490 55.8 4.9e-194 675.2
Tan02g2481 . 10 685 Mechanosensitive Ion Channel Family AT1G58200 57.8 7.5e-198 688.0
Tan01g1484 . 49 695 Mechanosensitive Ion Channel Family AT1G58200 53.0 5.7e-174 608.6
Tan05g1092 . 45 934 Mechanosensitive Ion Channel Family AT1G53470 56.7 3.3e-270 928.7
Tan02g0642 . 83 943 Mechanosensitive Ion Channel Family AT1G53470 50.8 4.2e-233 805.4
Tan05g1093 . 45 676 Mechanosensitive Ion Channel Family AT1G53470 51.9 8.0e-160 562.0
Tan05g1092 . 45 929 Mechanosensitive Ion Channel Family AT3G14810 53.8 2.8e-250 862.4
Tan05g1092 . 49 934 Mechanosensitive Ion Channel Family AT1G78610 59.9 2.4e-286 982.2
Tan02g0642 . 61 941 Mechanosensitive Ion Channel Family AT1G78610 56.8 6.8e-265 911.0
Tan05g1093 . 49 676 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.2e-173 607.8
Tan05g1092 . 224 930 Mechanosensitive Ion Channel Family AT2G17000 61.5 2.2e-239 826.2
Tan02g0642 . 271 944 Mechanosensitive Ion Channel Family AT2G17000 59.2 1.7e-220 763.5
Tan05g1093 . 224 676 Mechanosensitive Ion Channel Family AT2G17000 58.3 3.5e-136 483.4
Tan09g1102 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 3.3e-199 692.6
Tan01g3463 . 80 728 Mechanosensitive Ion Channel Family AT5G12080 55.8 3.5e-193 672.5
Tan09g1099 . 67 720 Mechanosensitive Ion Channel Family AT5G12080 51.1 3.1e-165 579.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67