Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0657 ATGGGTGTGGAACAAAACAATCACGATGCAGAGGAGGGAACGCTGGAGATTGGCATGGAATATAGAACAGTCTCCGGTGTTGCTGGTCCGTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAGGAGATTGTTAATATTCGTCTAGGAGATGGATCAACTAGGCGTGGTCAAGTCCTGGAAGTCGATGGGGAGAAAGCTGTTGTCCAGGTATTTGAAGGGACATCTGGAATTGATAATAAATATACAACTGTGCAATTTACTGGAGAGGTTTTGAAAACTCCAGTTTCCATGGACATGCTTGGGAGAATTTTTAATGGTTCTGGAAAACCCATTGACAATGGTCCTCCTATCTTGCCCGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCCGAAGAGATGATACAGACTGGGATTTCTACAATTGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCACTTTTCTCAGCTGCAGGTCTCCCTCACAATGAAATTGCTGCCCAGATATGTCGTCAGGCTGGCTTGGTAAAGCGGTTGGAGAAATCTAACGATCTTCTTGAGGGTGGTGACGAGGACAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACTGCTCAATTTTTTAAACGTGATTTTGAAGAAAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAACGATCCTACAATTGAGCGGATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCCCTTCGAGAGGTGTCTGCTGCACGAGAGGAAGTACCTGGAAGGCGTGGCTATCCTGGTTATATGTATACTGATCTTGCTACAATCTATGAAAGAGCTGGGCGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACCATGCCAAACGATGATATTACACATCCCACTCCCGATCTTACTGGCTATATTACCGAGGGACAGATCTACATTGATAGGCAGCTCTACAACAGACAGATATACCCACCAATTAATGTTCTTCCTTCATTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCGATTGGAAAGGATGTTCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCTTCTGAGGATCTGCTCTACTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCACTCAAGGAGCTTACGATACACGAAACATTTTTCAATCGCTCGATCTGGCATGGACACTGCTTCGCATTTTCCCTCGCGAACTTCTCCACCGTATACCTGCAAAGACTCTTGATCAGTTTTACAGCCGAGAATCTGCAAATTGA 1467 44.04 MGVEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSMDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGDEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRESAN 488
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 6041062 6047178 - Tan0020840.2 Tan02g0657 743283

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0657 488 Gene3D - 29 488 - -
Tan02g0657 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 16 486 IPR022879 GO:0007035(PANTHER)|GO:0046961(PANTHER)
Tan02g0657 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
Tan02g0657 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524(InterPro)
Tan02g0657 488 NCBIfam V-type ATPase subunit B 20 487 IPR005723 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Tan02g0657 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Tan02g0657 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Tan02g0657 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Tan02g0657 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Tan02g0657 488 Pfam C-terminal domain of V and A type ATP synthase 383 482 - -
Tan02g0657 488 FunFam V-type proton ATPase subunit B, brain 29 488 - -
Tan02g0657 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524(InterPro)
Tan02g0657 488 CDD V_A-ATPase_B 92 385 - -
Tan02g0657 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0657 K02147 - - csv:101211838 960.288
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0656 Tan-Chr2:6041062 Tan02g0657 Tan-Chr2:6041062 9.20E-283 tandem
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g198 . . . . . Bpe12g00130 . . Cmo19g00765 Cmo11g01753 . . . . Sed05g2251 Cpe04g00605 Cpe15g00607 Bhi05g01684 Tan02g0657 Cmetu10g1323 . . . . Cla02g00408 Cam02g0414 Cec02g0413 Cco02g0431 Clacu02g0417 Cmu02g0413 Cre02g0748 Cone12ag1245 . . . . Csa07g00121 . Cme01g01238 Blo04g00583 Blo13g00496 Bda15g01024 Bda14g00625 Bpe15g00802 . Bma03g00617 Bma08g00610 . . . Cma11g01365 Cma19g00752 . Car19g00587 . . . . . . . . . . . . . . . . Lsi11g01217 . Chy01g00662 .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan02g0771 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.9 0.0e+00 1231.1
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1214.1
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1209.5
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT2G21410 63.1 1.4e-299 1026.2
Tan02g0771 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1230.3
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1211.8
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.6 0.0e+00 1207.6
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT4G39080 64.2 1.2e-298 1023.1
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2042 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 250.4
Tan02g2043 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.6
Tan01g4004 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.5e-66 248.4
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan01g4004 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 7.7e-53 203.8
Tan02g2043 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.6
Tan02g2042 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.5e-52 200.7
Tan01g3673 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.8e-71 266.5
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.9 1.2e-70 263.8
Tan01g3674 . 4 119 Primary Pumps ATPases(2) AT2G25610 86.2 2.0e-46 183.3
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g3673 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 1.2e-74 276.9
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.0e-72 269.6
Tan01g3674 . 1 126 Primary Pumps ATPases(2) AT4G32530 85.7 2.8e-50 196.1
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.5 0.0e+00 1690.6
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.2 0.0e+00 1688.7
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan01g2494 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.2 0.0e+00 1329.3
Tan11g1934 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan11g1935 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan09g0175 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan02g0656 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0657 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan11g1478 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 6.6e-180 627.5
Tan02g0107 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan02g0108 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan05g1770 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan05g1771 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan03g1281 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1282 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1283 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan02g0656 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0657 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan07g0064 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 1.6e-65 246.5
Tan02g0656 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan02g0657 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.0e-192 666.8
Tan07g0064 . 1 231 Primary Pumps ATPases(2) AT4G11150 76.6 6.2e-88 321.2
Tan06g0024 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.6 0.0e+00 1177.2
Tan02g0656 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0657 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 5.8e-269 923.7
Tan02g0656 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0657 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 2.6e-269 924.9
Tan02g0656 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan02g0657 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 1.2e-266 916.0
Tan11g1478 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 6.6e-180 627.5
Tan02g0107 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan02g0108 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 9.5e-117 417.2
Tan05g1770 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan05g1771 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.0 2.8e-116 415.6
Tan07g0064 . 1 231 Primary Pumps ATPases(2) AT4G11150 76.6 6.2e-88 321.2
Tan07g0064 . 1 225 Primary Pumps ATPases(2) AT3G08560 69.9 6.0e-78 288.1
Tan07g0064 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 1.6e-65 246.5
Tan11g1934 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan11g1935 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan09g0175 . 1 126 Primary Pumps ATPases(2) AT4G02620 83.3 9.2e-57 216.9
Tan03g1281 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1282 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan03g1283 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 1.4e-205 713.0
Tan05g0297 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1339.7
Tan02g2027 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.7 5.6e-301 1030.8
Tan02g2028 . 1 804 Primary Pumps ATPases(2) AT2G28520 63.6 1.4e-299 1026.2
Tan02g0771 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-292 1003.0
Tan02g0771 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.9 0.0e+00 1231.1
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1214.1
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1209.5
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT2G21410 63.1 1.4e-299 1026.2
Tan02g0771 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1230.3
Tan02g2027 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1211.8
Tan02g2028 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.6 0.0e+00 1207.6
Tan05g0297 . 9 818 Primary Pumps ATPases(2) AT4G39080 64.2 1.2e-298 1023.1
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.0e-60 229.2
Tan01g4004 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 7.7e-53 203.8
Tan02g2043 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.6
Tan02g2042 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.5e-52 200.7
Tan02g2042 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2043 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan01g4004 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.6e-60 227.6
Tan02g2042 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 250.4
Tan02g2043 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.6
Tan01g4004 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.5e-66 248.4
Tan02g2043 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan01g4004 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.2e-74 274.2
Tan02g2042 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.4e-73 272.3
Tan01g3673 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 1.2e-74 276.9
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.0e-72 269.6
Tan01g3674 . 1 126 Primary Pumps ATPases(2) AT4G32530 85.7 2.8e-50 196.1
Tan01g3673 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.8e-71 266.5
Tan02g2689 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.9 1.2e-70 263.8
Tan01g3674 . 4 119 Primary Pumps ATPases(2) AT2G25610 86.2 2.0e-46 183.3
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 7.8e-199 690.3
Tan07g1248 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.0e-192 666.8
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.5 0.0e+00 1690.6
Tan01g2494 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.2 0.0e+00 1329.3
Tan02g1718 . 1 996 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1636.3
Tan01g2494 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.2 0.0e+00 1688.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003683 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 3 1 1 4 2 2 46