Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0661 ATGGATTTTGATGAGTATGATTATTTGGAGAAAACAGTTGAAAATCCTGAGGGGCAGAAACTGAAGGAAACTGCCAATGGCGGCGATGCAGAAATTAAGTCTGGAGATAAACATCGTAGTCGAAGTTCAAAGTATAAGAATGATGGTAAAGACGATGGGGAACATAGGTCGAAGCGTTCAAAATCAGAAGATGGGTCACGGGATCATGATCGACATAGAGATAGGACTTCTTCCCGGCACCGGTCTAGGTCTAGAGATAGAGACCGTGATCGGCACCGAAGCAGTAAGGAATATAGGGGAAAAGAGGACAGAGAAAGGAATCGGGAAGAGAGGAGCAGTAAGGACAGAGATGCGGACAGAGATAAAGAACGTGTTCATGATCGTGATAGACGAGGTAGAGATGGTGAAAGGGATAAGGAAAGAGAACGGTCACGTCGAAGTAGAAGTCGTTCGGAAAGACATCGCAGTGATAGAGATGAAAGCATAAGAGAGAGGAGGCAAGATAATGAATTCAGAGAAAGGGAAAAGGAGAGAGAGTCGAGAGAGCGAGGAAGAGATGGCAGAAGATATAAAGAGAAAAAAGAAGAAGCCGCAGAACCAGAAGCTGATCCTGAAAGGGACCAGAGGACTGTTTTTGCCTATCAGATAAGTTTAAAGGCAACTGAAAGAGACGTGTATGAATTCTTCTCCAGGGCTGGTAAGGTGCGAGATGTACGTCTCATAATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCAGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAGAACCAGGTTCAGTCAACTTCTGCTGTCGGTGGAGCAGGTGGAGTAATGGGCCCTTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCATCCCAACATAACAGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCACTGTGGAACTGGTTCAGATGCCTGTTGATGAAAGTGGGCATTGCAAGGGTTTTGGTTTTGTTCAGTTCACACGTCTTGAAGATGCTAGAAATGCACTTAGTTTGAATGGACAACTGGAAATTGCTGGTCGAACGATAAAGGTGTCCACAGTCACAGATCAGCCTGGACTGCAAGATATTGGAGCAACTACTGGAGACCTTGATGATGAAGATGGAGGTGGCTTGTCCTTAAACGCAAGTTCTCGAGCATCTCTGATGCAGAAGCTGGACCGTACTGGCACCGCTTCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTTAATAACACAGGCGCTGCTTTGCCAATAGCGCCGATTCTTGGAGCTGCAACTATTCCTTCCCTTGCTACTTCTTTGGCCACCGTCCCTACTTTTCCTGGACTCGGTGCAGGCATTCAGCTTCCCACTGCTACTGCCAATTTACTTGGTGTTGGTTCTCCAAGTGAATGCTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGTCGGAACCAAATTTTGACCTGGATATCAGAGACGATGTTGAGGAGGAATGCTCTAGGTTTGGAAAATTGAGACACATATATGTCGACAAGAATAGCGCGGGTTTTGTATATTTAAGATTTGAAAATTCACAGTCTGCAATGGATGCACAACATGCCCTTAATGGAAGATGGTTTGCTGGCAAAATGATCGGTGCAACTTTCATGGACATCTCGAGCTACGAAGCGAAATTTCCCGACAGCATATAG 1779 45.31 MDFDEYDYLEKTVENPEGQKLKETANGGDAEIKSGDKHRSRSSKYKNDGKDDGEHRSKRSKSEDGSRDHDRHRDRTSSRHRSRSRDRDRDRHRSSKEYRGKEDRERNREERSSKDRDADRDKERVHDRDRRGRDGERDKERERSRRSRSRSERHRSDRDESIRERRQDNEFREREKERESRERGRDGRRYKEKKEEAAEPEADPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAVGGAGGVMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPVDESGHCKGFGFVQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDIGATTGDLDDEDGGGLSLNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGAALPIAPILGAATIPSLATSLATVPTFPGLGAGIQLPTATANLLGVGSPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLRHIYVDKNSAGFVYLRFENSQSAMDAQHALNGRWFAGKMIGATFMDISSYEAKFPDSI 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6127847 6143137 + Tan0001503.1 Tan02g0661 743287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0661 592 NCBIfam splicing factor, CC1-like family 83 590 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)
Tan02g0661 592 SMART rrm1_1 210 282 IPR000504 GO:0003723(InterPro)
Tan02g0661 592 SMART rrm1_1 499 577 IPR000504 GO:0003723(InterPro)
Tan02g0661 592 SMART rrm1_1 313 385 IPR000504 GO:0003723(InterPro)
Tan02g0661 592 CDD RRM3_RBM39_like 497 580 - -
Tan02g0661 592 CDD RRM1_RBM39_like 210 282 - -
Tan02g0661 592 Pfam RNA recognition motif 314 383 IPR000504 GO:0003723(InterPro)
Tan02g0661 592 Pfam RNA recognition motif 522 573 IPR000504 GO:0003723(InterPro)
Tan02g0661 592 Pfam RNA recognition motif 218 277 IPR000504 GO:0003723(InterPro)
Tan02g0661 592 Gene3D - 148 296 IPR012677 -
Tan02g0661 592 Gene3D - 305 392 IPR012677 -
Tan02g0661 592 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 403 516 IPR029123 -
Tan02g0661 592 MobiDBLite consensus disorder prediction 1 206 - -
Tan02g0661 592 SMART rrm2_1 313 385 IPR003954 GO:0003676(InterPro)
Tan02g0661 592 SMART rrm2_1 499 577 IPR003954 GO:0003676(InterPro)
Tan02g0661 592 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 591 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)|GO:1990446(PANTHER)
Tan02g0661 592 SUPERFAMILY RNA-binding domain, RBD 312 578 IPR035979 GO:0003676(InterPro)
Tan02g0661 592 SUPERFAMILY RNA-binding domain, RBD 202 310 IPR035979 GO:0003676(InterPro)
Tan02g0661 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 581 IPR000504 GO:0003723(InterPro)
Tan02g0661 592 Gene3D - 494 592 IPR012677 -
Tan02g0661 592 FunFam CC1-like, splicing factor 307 415 - -
Tan02g0661 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723(InterPro)
Tan02g0661 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0661 K13091 - - csv:101209872 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0661 Tan-Chr2:6127847 Tan03g1364 Tan-Chr3:70098714 3.40E-130 dispersed
Tan03g2778 Tan-Chr3:80790421 Tan02g0661 Tan-Chr2:6127847 7.40E-06 dispersed
Tan11g0526 Tan-Chr11:4553845 Tan02g0661 Tan-Chr2:6127847 8.70E-06 dispersed
Tan11g0527 Tan-Chr11:4553845 Tan02g0661 Tan-Chr2:6127847 8.70E-06 dispersed
Tan02g0661 Tan-Chr2:6127847 Tan01g4821 Tan-Chr1:114035013 1.10E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65