Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0735 ATGGGTTTCCGTTTGCCTAGGATTGTTCATGCTAAGCAAAGTCTTCGACGATCTACATCAATAGGAAATGGAGCATCTTCAAAAGCTGTAGACATTCCAAAAGGCTACTTCACAGTTTATATTGGCGAGGAACAAAAGAAGCGTTTTGCCATCCCACTATCTTACTTGAATCAGCCTTCATTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATGATCATCCCATGGGTGGCATCACGATTCCTTGCAGTGAAGAAACTTTTCTCAGTCTCACTCAGACACAAAATCGCCCTCTAAAGCCAAAAATCAAAACAACCCACAAAATCAAAATCCTCGAGATACATACCATGGGATTCCGCTTGATAAACAGCCCAAGGAAATCGTCATCGACTGTTCCAAAGGGGTTTTTCGCCGTCTACGTTGGAGAGACCCAAAAGAGACGACATGTGATTCCAATTTCTTACTTGAAGCATCCGTCGTTCCAAGATTTGTTGAGTAAAGCCGAAGAAGAGTTCGGATTCGATCATCCAATGGGGGGCTTGACAATCCCTTGCAACGAAGATGTATTCTTCGAAGTCACATCTCGCTTGGCTAATTGTTGA 609 42.53 MGFRLPRIVHAKQSLRRSTSIGNGASSKAVDIPKGYFTVYIGEEQKKRFAIPLSYLNQPSFQDLLSQAEEEFGYDHPMGGITIPCSEETFLSLTQTQNRPLKPKIKTTHKIKILEIHTMGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANC 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6843336 6849545 + Tan0019992.1 Tan02g0735 743361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0735 202 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 128 199 IPR003676 GO:0009733(InterPro)
Tan02g0735 202 Pfam Auxin responsive protein 17 94 IPR003676 GO:0009733(InterPro)
Tan02g0735 202 Pfam Auxin responsive protein 125 198 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0735 K14488 - - vvi:100252008 213.386
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0720 Tan-Chr2:6742631 Tan02g0735 Tan-Chr2:6843336 1.20E-24 dispersed
Tan02g0729 Tan-Chr2:6818059 Tan02g0735 Tan-Chr2:6843336 1.70E-15 dispersed
Tan02g0732 Tan-Chr2:6829589 Tan02g0735 Tan-Chr2:6843336 2.20E-10 dispersed
Tan02g0733 Tan-Chr2:6837742 Tan02g0735 Tan-Chr2:6843336 7.00E-44 dispersed
Tan02g0735 Tan-Chr2:6843336 Tan05g1210 Tan-Chr5:12006650 3.10E-51 dispersed
Tan02g0734 Tan-Chr2:6839865 Tan02g0735 Tan-Chr2:6843336 3.00E-44 tandem
Tan02g0735 Tan-Chr2:6843336 Tan02g0736 Tan-Chr2:6868152 1.60E-15 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g69 . . . . . . . . . . . Cma20g00793 . . Sed05g2272 . Cpe15g00572 Bhi05g01767 Tan02g0735 Cmetu01g0608 . . . . . . . . . . . . . . . Lsi10g00435 . . Cme01g01310 . . . . . . Bma03g00581 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00440
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213