Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0757 ATGGAAGCCGAAGAAGACGATTCTTCGAAACACGACGAACCATCATCTCTTATGTACGTTGATGATGGCAACAACAACTTGGATGTTAAGCGTGACCCCCATCGGGAGCTTCAGAGCAATGAAGAACAGCATTGTGTGTTCAAGTCCGCCATTAACGAAATGGAGTTTACACCTAATACCAGCGTTGAATCTTTGCAGCCTAGAGATGCAATTCTTGGGGACGATAGTCTTGTTGCAGAGACTTATTCAGAGATGGAGAAGAAGGATGTGGTGGAGGAGATAGAGATAGCAGAGGAGAAGGCTTTTCGTAACATTATTGAGGATATTGCGGAAGATTCAGTGAAGTTGGAGATTGAGCCGGATATTGCGGAGATTGGGTTATTGGAGCAAAGGGTTTTCGGTGATGTGAAAGAGGAGACGGGGGCGGAGGAAGAGAAGGGTGTTACTGAATTTGGAGAAGGTGGGTTGTTACATGAAATGGTTTTGGTTGGTGTTGCTGAAAATCAGGTTGAGAGCAACGTTTTGATAGCGAATTTTCCAGAGAATACAGTTGGCTGTGGTGAGACAATTGAGAAGACATGTCTGACTGATGTTATGGCTGAGGAAACGCTTGCAGAAACGAGTCTCTTTGTGCAGGGTTTAGATGTTACTGATGCAGCTAATTTGGTGGAGAAGACAGAAGTGGACGAGAATGCTGATAGCCCCAACGACTCTAAGAATATAGAGGTGGCAAAGCAAGAAAATTTTGCTACGGAGGATAGGGACTTAGGCGTCCCAGTGCAACTCGTGGAGAACTCCGAGTTGAAAGTTAGTTTGGCAGATGGGGCTATGGTGGAGGAGGGACGAACAGCTAATTTAGCAAACATAACTGGTGAAATGTTGAAGATGGAGAATGTGTCGAGCAACACTGATGAGGTGGGGCTGACAAATTTGGCTGGTGACATTGGTGGGGTGGTAAATATGGAGAATACTGAAGACAAGGACATAACAGACTACAGTAATGAAGCGTTGAGGATTGAGAACGTGGAAGATAAAGGATTAGGTGTGGCCGATGAGAGTGCCGAGGTCGGAAAGATTGAGAATGTGGTAGATGAGACTGCAGAGGCTGAGGGAGTGCAAGTGACAGACTCCACCCCCGAAGTCGAGAATGTGGAAGACAAGACCGCAGAAATGGAGGAAATAGCTATGGAAGAAGAGACTGAGGAGGCAGATGACAGGGTTTATTTGGTGGATGAAGGGGTTGGATCAGAGGAGACTGATGCAAACATGACATACTTGGTGGGGGAAGCAGAAGCAGCAGAGGAGGTCGAGGAAATGGATGTTACAGAGGAGGTTGATGAGCCAAGTAAAGGCAGCAGTGGGGCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAGCTAGAGTGCCTTCTAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGACCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCTTCCTGTATTAATCGTGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTTTGTAGTAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACATTTTCCTTGTGCAAGGGCTGCATAAAAAATGCTGTTATTTTGTGTGTTAGAGGGAACAAAGGCTTTTGCGAGGCATGCATGAGATTTGTTATGTTGATTGAAAAGAATGAGCAGGAGAATACAGAAAAGGGCCAAATTGATTTTAATGACAAAAATAGCTGGGAATATCTTTTCAAGGAGTACTGGACTGACCTGAAGGGAAGCCTTTCTCTAACTTTTGATGAACTTGTTCACGCAAAAAACCCATGGAAAGGATCTGAGACACCAACTAGCAGGCCCGATTCACCTGGTGAGCTATGCGATGGTAATGTTGACGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAGAAAAGAAAAGCCAAGAAAAGGTCAAAATCCCATGCAAAGGAAACAAGTTCACCTAGTATGCCAATTATACCTGATTCTCAAGGGCCATCCACCGATAACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTTATGCACATGAAGAATGGTGACAAAACTGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTCCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTTGAGAATTTGTTTGGAAAGCCGCGCGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCGCACTTCCTCATCAAAGAGGATGCCCAGATAAATGACCTCCAAGGGAGTGTTGCTGGTACTGAATCAAGTCAGTTGGAGGCTGATGGGCACACTGATGCGTCGGGAAAGACTAGGAAAGAGAAGAAACGCAGGATGCGGAAAAAAGGTGATGAGAGAGGATTGCAGTCTAACCTTGATGACTATGCAGCCATTGATATTCACAACATTAATTTAATTTACTTAAGACGTAATTTGGTGGAATATCTGATTGAAGATGAGGAGAGTTTTCATGACAAGGTTGTTGGTTCTTTTGTGAGGATAAGGATATCAGGCAATGCACAAAAACAAGATTTATACCGGCTGGTTCAAGTTGTAGGTACCAGCAAAGCATCTGACCCTTATAAAGTTGGTAAAAAGATGACAAATATCTTACTAGAGATCTTGAATTTGAACAAGACAGAAGTGGTTTCAATTGATATTATCTCAAATCAAGAGTTCACGGAGGAGGAGTGCAAGCGTCTCAGACAGAGCATTAAGTGTGGAATCCTTAACCGTCTGACTGTGGGTGACCTCCAGGAGAGAGCAATGTCGCTCCAAGATGCTAGAGTTAAGGATTGGATGGAAACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCGAGTGAAAAAGGGCGCCGAAAAGAGCTTAGAGAATGTGTCGAGAAACTACAGCTTTTGAAGACACCTGAGGAGCGGCAGCGCAGACTGGAGGATATACCGGAAATCCATACAGACCCAAATATGGATCCGAGTCACGAATCTGAAGATGAAGATGAAGCAGATGATAAGAGACAAGAAACCTATACCTTGTCAAGAGGCTCAAGCTTCAGCAGGAGAATGAGGGAGCCAGTTTCTCCTGGGAAAGGAGGTTCAAATTTGAATGATTCCTGGAGTGGAAGTAGAAACTTTTCGAACACAAATCGGGACTTGAGCAGGAACTTGTCTGGCAAAGGCTTCTCTAATCAAGGCGACGATGCCATTGGTTCTGGTGAAATAATAAATGAAAATTCTTGGAGTCAAGGAAAAGAGAGAGATGTTAAAAAAACAAGTAAGTGGGACAAGCAACAGGTTTCGACTAGTTCAGAAATCACTGCTAGGAATGCCTTGTCTGGGGCAGCATCCGAGTTGTCTTCTGCCGCTCATTCATTAAATCCAGCAGCATCTCCATCTGTAGGGGCTACACAAAATGCTGCTGTAGTTAATGAATCAGAGAAGATATGGCGTTATCAGGATCCATCTGGGAAAGTGCAGGGACCGTTTTCGATGGTGCAACTCCGTAAGTGGAGTAACACAGGCTATTTTCCTGCTGACTTGAGAGTATGGAGAACCTCAGACAAGCAAGACGACTCCCTACTTTTGACCGATGTCTTGGCGGGAAAGATCCCAAAGGACACTTCGTTGATGGATAACAATTTCCAAGCACACACACATGCTTCTTCATTTGTTGCGAAGCCTCAGGGAGCCACTTTGCAGTCAGGCATGGATGGGCAAAATACTGGTACTTCAAATCCACATACTAATCCGACTTCTTATGGCCATTCTTCTGGAGGAAGATGGAAATCTCAAAATGAAGTTAGCCCTACTGGTAGACCTGCCTCGGCTTCGATAGAAGTCCCGAGGTACTCGGGAGAGAGGTGGTCTTCTGACCATGGAAATAAGAACTTCACAAGTCTTCCTTCTCCTACTCCCAGCCCAGGAGGAACAAAGGACCAGCCATTTCAAGTGGCTGCGCCGTTCAGCTCCTCAGGAGGTGGTGGCGGTGTGCACGGTTCTTCACTTATGCACGGGTCTGAGAATGATTCCTTGCGCTCGCATTCTGGCCTGAATGCAGCAGAAAAGGGCATGGGTTTAGGTCCTATAAATGCACATCAAAATCATCAATCTCAGCCAGTAAGGCCATCACCTATCATTGATGATGCTTCGGTCAATCCGGCTGCAGATATTAAAAGCATTAGCGCAAATCTTCACTCTTTAGTACAATCCATCAACAGTCGTAATCCTCCCATTGAAACTCAAAAAGTTGAATCAAACATGTCTTCTAGCATGCCGCCAGCACAAACTTTTCACAGTCGTTGGGGGGATATGTCGCCTGTGAAAAATGCTGCTACATCGTTCAGTGCCGGAAATTCGACAGCGAGTTTTTCCACGTCCAGTTTGACGAGTTTTCCATCTTCTGACCCTTGGCGATCTACACCTCCTATTCCCAGTAACCCGCCACACATTCAGTCTTCAACTCCACCTAATATACCTTGGGGGGGAATGGGTGCTCCAGAAGGTCAAAGTACCGTTCCGCGACCGGGGTCGGAGTCTCAGAACCAAGGCTGGGTGGTCATGCCATCAGGAAATCCAAACCCATGGGGTGCATCAGCACCTCCGAACGCTACTGGTACGTGGGTATCTGCTGCACAAAGTTCTGCTCCTGTAGGTACAAACCCTGGTTGGATTGCTCCAGGTCAAGGGCCACCAGCCGGAAACAACATCCAAGGATGGCAAGCGCACAGCCCAATGCCACCTCCGGTAAACGCAACTCCGGGATGGGTTGCCCCCAACCTCGGACCGATGCCACCCATGAACGTTAATCCCAATTGGCCTGTCCCATCTGCAAATCAGGGCATGTGGAGTAATGAGCATGGTAAAAATGGGGATAGATTCTCGAACCAGAAGGACGGTGGCTCTCACGGCGGAGATCCCGGGAATGGAGGTAAATCTCGGGGGATGCAGCCACCATATGGTGGTGGTGGTGGTAGTTCTTCTTGGCTTCCTTATAATAATAAAGCGCTAAAATTGTGCAAGTACCATGAAAGTGGACATTGCAAGAAAGGAGGTTCTTGTGATTACAGGCACATGTAG 5190 45.92 MEAEEDDSSKHDEPSSLMYVDDGNNNLDVKRDPHRELQSNEEQHCVFKSAINEMEFTPNTSVESLQPRDAILGDDSLVAETYSEMEKKDVVEEIEIAEEKAFRNIIEDIAEDSVKLEIEPDIAEIGLLEQRVFGDVKEETGAEEEKGVTEFGEGGLLHEMVLVGVAENQVESNVLIANFPENTVGCGETIEKTCLTDVMAEETLAETSLFVQGLDVTDAANLVEKTEVDENADSPNDSKNIEVAKQENFATEDRDLGVPVQLVENSELKVSLADGAMVEEGRTANLANITGEMLKMENVSSNTDEVGLTNLAGDIGGVVNMENTEDKDITDYSNEALRIENVEDKGLGVADESAEVGKIENVVDETAEAEGVQVTDSTPEVENVEDKTAEMEEIAMEEETEEADDRVYLVDEGVGSEETDANMTYLVGEAEAAEEVEEMDVTEEVDEPSKGSSGAKRKRGKNSKAPARVPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCEACMRFVMLIEKNEQENTEKGQIDFNDKNSWEYLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETPTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKRKAKKRSKSHAKETSSPSMPIIPDSQGPSTDNNVEWASKELLEFVMHMKNGDKTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQINDLQGSVAGTESSQLEADGHTDASGKTRKEKKRRMRKKGDERGLQSNLDDYAAIDIHNINLIYLRRNLVEYLIEDEESFHDKVVGSFVRIRISGNAQKQDLYRLVQVVGTSKASDPYKVGKKMTNILLEILNLNKTEVVSIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEDIPEIHTDPNMDPSHESEDEDEADDKRQETYTLSRGSSFSRRMREPVSPGKGGSNLNDSWSGSRNFSNTNRDLSRNLSGKGFSNQGDDAIGSGEIINENSWSQGKERDVKKTSKWDKQQVSTSSEITARNALSGAASELSSAAHSLNPAASPSVGATQNAAVVNESEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRVWRTSDKQDDSLLLTDVLAGKIPKDTSLMDNNFQAHTHASSFVAKPQGATLQSGMDGQNTGTSNPHTNPTSYGHSSGGRWKSQNEVSPTGRPASASIEVPRYSGERWSSDHGNKNFTSLPSPTPSPGGTKDQPFQVAAPFSSSGGGGGVHGSSLMHGSENDSLRSHSGLNAAEKGMGLGPINAHQNHQSQPVRPSPIIDDASVNPAADIKSISANLHSLVQSINSRNPPIETQKVESNMSSSMPPAQTFHSRWGDMSPVKNAATSFSAGNSTASFSTSSLTSFPSSDPWRSTPPIPSNPPHIQSSTPPNIPWGGMGAPEGQSTVPRPGSESQNQGWVVMPSGNPNPWGASAPPNATGTWVSAAQSSAPVGTNPGWIAPGQGPPAGNNIQGWQAHSPMPPPVNATPGWVAPNLGPMPPMNVNPNWPVPSANQGMWSNEHGKNGDRFSNQKDGGSHGGDPGNGGKSRGMQPPYGGGGGSSSWLPYNNKALKLCKYHESGHCKKGGSCDYRHM 1729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7152912 7164258 + Tan0001963.1 Tan02g0757 743383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0757 1729 FunFam Zinc finger CCCH domain-containing protein 19 469 569 - -
Tan02g0757 1729 Gene3D - 837 967 IPR036128 GO:0003677(InterPro)
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1328 1358 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1268 1310 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 432 470 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1508 1525 - -
Tan02g0757 1729 ProSiteProfiles Plus3 domain profile. 836 969 IPR004343 GO:0003677(InterPro)
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1 29 - -
Tan02g0757 1729 CDD SWIB-MDM2_like 700 775 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1643 1660 - -
Tan02g0757 1729 ProSiteProfiles GYF domain profile. 1184 1238 IPR003169 GO:0005515(InterPro)
Tan02g0757 1729 CDD GYF 1184 1239 IPR003169 GO:0005515(InterPro)
Tan02g0757 1729 FunFam Zinc finger CCCH domain-containing protein 19 837 966 - -
Tan02g0757 1729 ProSiteProfiles Zinc finger C3H1-type profile. 1704 1729 IPR000571 GO:0046872(InterPro)
Tan02g0757 1729 MobiDBLite consensus disorder prediction 623 697 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1011 1143 - -
Tan02g0757 1729 SMART PHD_3 479 525 IPR001965 -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1485 1507 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1118 1132 - -
Tan02g0757 1729 CDD PHD5_NSD 479 524 - -
Tan02g0757 1729 Gene3D - 1186 1244 IPR035445 -
Tan02g0757 1729 CDD Bbox1 525 550 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1011 1030 - -
Tan02g0757 1729 SMART rtf1 836 946 IPR004343 GO:0003677(InterPro)
Tan02g0757 1729 MobiDBLite consensus disorder prediction 793 825 - -
Tan02g0757 1729 Pfam SWIB/MDM2 domain 702 775 IPR003121 -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 677 697 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1485 1552 - -
Tan02g0757 1729 FunFam Zinc finger CCCH domain-containing protein 19 688 782 - -
Tan02g0757 1729 SUPERFAMILY FYVE/PHD zinc finger 470 524 IPR011011 -
Tan02g0757 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 570 IPR013083 -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1642 1698 - -
Tan02g0757 1729 Coils Coil 381 401 - -
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1268 1420 - -
Tan02g0757 1729 SUPERFAMILY Plus3-like 837 967 IPR036128 GO:0003677(InterPro)
Tan02g0757 1729 Gene3D SWIB/MDM2 domain 688 784 IPR036885 -
Tan02g0757 1729 SMART swib_2 695 780 IPR019835 -
Tan02g0757 1729 ProSiteProfiles SWIB/MDM2 domain profile. 694 777 IPR003121 -
Tan02g0757 1729 ProSiteProfiles Zinc finger PHD-type profile. 477 543 IPR019787 -
Tan02g0757 1729 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 412 1728 - -
Tan02g0757 1729 SUPERFAMILY SWIB/MDM2 domain 695 776 IPR036885 -
Tan02g0757 1729 SMART gyf_5 1185 1240 IPR003169 GO:0005515(InterPro)
Tan02g0757 1729 MobiDBLite consensus disorder prediction 1069 1102 - -
Tan02g0757 1729 Pfam Plus-3 domain 841 944 IPR004343 GO:0003677(InterPro)
Tan02g0757 1729 Pfam GYF domain 1187 1230 IPR003169 GO:0005515(InterPro)
Tan02g0757 1729 ProSitePatterns Zinc finger PHD-type signature. 480 540 IPR019786 -
Tan02g0757 1729 SUPERFAMILY GYF domain 1177 1237 IPR035445 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0757 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1270 Tan-Chr1:12458017 Tan02g0757 Tan-Chr2:7152912 3.80E-187 dispersed
Tan02g0757 Tan-Chr2:7152912 Tan10g0026 Tan-Chr10:585926 2.40E-51 dispersed
Tan02g0757 Tan-Chr2:7152912 Tan08g1823 Tan-Chr8:70210383 6.90E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g34 . . . . . . . . . . . . . . Sed05g2290 . . Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26713 PF03126 Plus-3 7.70E-25 No_clan Tan TR