Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0772 ATGGATCGGAGTTTCTTCTTGTTCGCCGTCGTGGCCGCCGCCGCCACCCTCTGCTCATCGGAATCTTCGGCCTCGCCGCATTCTGTCAAACGCAACGGCGATCCGCTGATTCGTCAGGTCGTCGACGATAGCGATTTCAATCGTCTCCCGCTCGGAGCAGAGCACCATTTTTCGCTCTTCAAGCGAAAGTTCGGGAAATCGTATGCTACCGAGGAAGAGCACGATCGCAGGTTCAAGATCTTCAAGGCGAATATGCGACGGGCCCTGCGCCATCAGTCTTTTGATCCATCCGCTATTCATGGCGTCACTCAATTCTCCGATTTGACCCCTTTCGAGTTCCAAAAGACCTTTCTAGGGCTCCGAGGTCAACGTCTTAGACTTCCTGTAGATGCCAATCAGGCTCCGATTCTTCCAACGGAGAATCTTCCGAGCGATTTTGATTGGAGAGAACATGGTGCTGTAACTGCTGTGAAAAATCAGGGATCTTGTGGATCCTGCTGGAGTTTCAGCACAACCGGTGCCCTTGAAGGTGCTAATTTCCTTGCGACAGGGGAACTTGTTAGCTTAAGCGAACAGCAGCTGGTAGATTGTGATCACGAGTGTGATCCAGAGGAAGGTGGTTCCTGTGATTCTGGTTGCAAGGGTGGCCTAATGAATAGTGCATTTGAATACACACTAAAAGCTGGAGGTCTGATGAGGGAGCAAGACTATCCCTATACTGGAACTGATCGTGGAACCTGCAACTTTGACAGGTCCAAGATTGCTGCATCAGTTGCCAATTTCAGCATTGTTTCACTTGATGAGGATCAAATTGCTGCTAATCTCGTCAATAATGGCCCACTTGCAATTGCTATCAATGCGGTGTTCATGCAGACATATATAGGTGGAGTATCTTGTCCATTCATATGTTCAAAGCGGTTGGATCATGGAGTTTTGTTGGTGGGTTATGGCTCAGCTGGCTATGCTCCCATCAGAATGAGAGACAAAAACTATTGGATCATAAAAAATTCTTGGGGTCAAAACTGGGGAGAAAATGGCTACTATAAGATTTGCAGAGGTAAAAATATCTGTGGAGTTGATTCCTTGGTCTCAACTGTTGCAGCAGTTCATACTCCCATTGCAGCTGCAGAAGAAGCTCAGTAG 1143 47.94 MDRSFFLFAVVAAAATLCSSESSASPHSVKRNGDPLIRQVVDDSDFNRLPLGAEHHFSLFKRKFGKSYATEEEHDRRFKIFKANMRRALRHQSFDPSAIHGVTQFSDLTPFEFQKTFLGLRGQRLRLPVDANQAPILPTENLPSDFDWREHGAVTAVKNQGSCGSCWSFSTTGALEGANFLATGELVSLSEQQLVDCDHECDPEEGGSCDSGCKGGLMNSAFEYTLKAGGLMREQDYPYTGTDRGTCNFDRSKIAASVANFSIVSLDEDQIAANLVNNGPLAIAINAVFMQTYIGGVSCPFICSKRLDHGVLLVGYGSAGYAPIRMRDKNYWIIKNSWGQNWGENGYYKICRGKNICGVDSLVSTVAAVHTPIAAAEEAQ 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7324703 7327071 - Tan0007194.1 Tan02g0772 743398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0772 380 CDD Peptidase_C1A 143 366 IPR039417 -
Tan02g0772 380 Gene3D Cysteine proteinases 27 367 - -
Tan02g0772 380 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 160 171 IPR000169 -
Tan02g0772 380 SUPERFAMILY Cysteine proteinases 55 366 IPR038765 -
Tan02g0772 380 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Tan02g0772 380 FunFam Cysteine protease RD19A 35 367 - -
Tan02g0772 380 PRINTS Papain cysteine protease (C1) family signature 331 337 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan02g0772 380 PRINTS Papain cysteine protease (C1) family signature 309 319 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan02g0772 380 PRINTS Papain cysteine protease (C1) family signature 160 175 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan02g0772 380 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 56 360 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Tan02g0772 380 SMART Inhibitor_I29_2 57 113 IPR013201 -
Tan02g0772 380 SMART pept_c1 142 367 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Tan02g0772 380 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 331 350 IPR025661 -
Tan02g0772 380 Pfam Cathepsin propeptide inhibitor domain (I29) 57 113 IPR013201 -
Tan02g0772 380 Pfam Papain family cysteine protease 142 365 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0772 K01373 - - csv:101217613 660.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0772 Tan-Chr2:7324703 Tan03g1587 Tan-Chr3:72112229 8.50E-58 dispersed
Tan04g0633 Tan-Chr4:5328303 Tan02g0772 Tan-Chr2:7324703 4.30E-115 transposed
Tan02g0772 Tan-Chr2:7324703 Tan02g2026 Tan-Chr2:89559662 5.30E-153 wgd
Tan02g0772 Tan-Chr2:7324703 Tan05g1254 Tan-Chr5:13296905 2.20E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102