Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0781 ATGGATGTTAGTTTGGAACAGGTAAAGAAAGCCACTGAATACCCGACAACGTCTACATCTCCTGCTAAAGTATCCCTTTCAATCCCTTCAACTTCATCTTTATCAGCATCCCCTCTATCAACCCACAGTCATCTGCCTCCCACCAGTTTGACCTCATCAAGATTGTTCCACTGTTCTCCTGGGCACCGATTACTCCGCCAAGTATCTGGCAACCGCATCCCAGCATACAAGTCACCAAATAGCGGCACAGTTTCAGAGGACAGGCGTGCAATCCCTGGGAGCAATGATTCATTAAGGGGCTCACATGGTGGGTCTTCTGATGGTTGGTCTATGAATGCTTTCTCTGAGCTCATGGCAACTTCACATAGGGGAAGATGGTCATTTGGTAGTGAATCCTTTGACTTTGCTCGTGAGAAGATGGTTAGATCCTGCAGCCTATTCTCAACTTCGCCTTCTGCTGATACGCAAACATGCGGAATTTGCTCGATGCTGTTGGTTGAGAGATCATTATGGACCAGCCAAAAGATAATTGTTAACAATGAGCTGTCTGTCGTTGCTGTCCTAACTTGTGGACATGTTTATCATGCTGAATGTTTGGAGAACATGACACCTGAAATTAGCAAGTATGATCCAGCCTGCCCAATATGTTCATTTGGTGAGAAGCAGACACTAAAGATGTCCGAGAAAGCACTTAGAGGTGAATTAGAATTGAAAATTAGAAATAAGAGGTTAAGGAATCGCATTGCGGATAGTGGTCTTGACGGTGAATCCACTGTGTTTGACCAGTTTATAAATACTGGACAAGGGAAGTGTCCGAAGTTGTCCTCTAGCTCCAGTTTGAGAGGTTCGTCAGGGAAGGGTTTCTTGAGGCGTCACTTCTCCTTTGGCTCAAAGGGGGGGACTAAAGCCTTGCCAGACAGTAACAGCACAGCGAAGAGAAAGGGATTGTTATGGTCAAGATCTACTAAAATGTGA 975 45.23 MDVSLEQVKKATEYPTTSTSPAKVSLSIPSTSSLSASPLSTHSHLPPTSLTSSRLFHCSPGHRLLRQVSGNRIPAYKSPNSGTVSEDRRAIPGSNDSLRGSHGGSSDGWSMNAFSELMATSHRGRWSFGSESFDFAREKMVRSCSLFSTSPSADTQTCGICSMLLVERSLWTSQKIIVNNELSVVAVLTCGHVYHAECLENMTPEISKYDPACPICSFGEKQTLKMSEKALRGELELKIRNKRLRNRIADSGLDGESTVFDQFINTGQGKCPKLSSSSSLRGSSGKGFLRRHFSFGSKGGTKALPDSNSTAKRKGLLWSRSTKM 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7444629 7449096 - Tan0021793.3 Tan02g0781 743407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0781 324 PANTHER EXPRESSED PROTEIN 19 222 - -
Tan02g0781 324 SMART ring_2 158 216 IPR001841 -
Tan02g0781 324 MobiDBLite consensus disorder prediction 299 324 - -
Tan02g0781 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 218 IPR013083 -
Tan02g0781 324 MobiDBLite consensus disorder prediction 69 105 - -
Tan02g0781 324 SUPERFAMILY RING/U-box 154 218 - -
Tan02g0781 324 ProSiteProfiles Zinc finger RING-type profile. 158 217 IPR001841 -
Tan02g0781 324 MobiDBLite consensus disorder prediction 301 324 - -
Tan02g0781 324 MobiDBLite consensus disorder prediction 73 90 - -
Tan02g0781 324 MobiDBLite consensus disorder prediction 1 46 - -
Tan02g0781 324 MobiDBLite consensus disorder prediction 10 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0781 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0781 Tan-Chr2:7444629 Tan05g1268 Tan-Chr5:13927380 3.20E-98 dispersed
Tan02g0780 Tan-Chr2:7444629 Tan02g0781 Tan-Chr2:7444629 1.60E-180 tandem
Tan02g0781 Tan-Chr2:7444629 Tan02g0782 Tan-Chr2:7444629 8.80E-181 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74