Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0787 ATGATGAACAGAGCATTGCCGGAGATGTTGCACTGTTTGAACAATGCAGGGAACTGTCCCGACACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTGAAATGGCAGCAAGATCAACTTTTGCATCAGCAGCACCAGCCAATGAGTCAGAGCTGTTTCAATAGGGTGGATTACGGCGGCGGATTCCCGCCGCCGGTGGCTGTTCCGGCGGATCACCTCACGGGGTTTCCGGGGTTCATGAGTGGCGGCGGTGGTGGGTTGTCACTTGTTGAGATGGTGATGGGGGCAGTGAAGCCTGACCCTGGGTTGGAAGATGGGTGGTCTGAAATGGATAAGTTTGATCCTTCTCTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGACCCCGGCGGTGGCGGAGAAGATTGAGTCGCCGGCTGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACCACCACCAACAACAAGGTGACTGTGGAGGAAGATAACAACAACAACAACAAAGAGAAGAGGATCAAAGCAAGTGCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGCACCAAAAACAACAACTCAACCACTACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCCTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGGCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCAGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTCGAGTTCTTGTCCATGAAGTTAGCTGCAGTCAATCCAAGGTTCGACATCAATGTCGATGATCTCTTCACCAAAGAGGTATTTCCCCCTCCGTGCACCACCGCGAACTTCCCGGCGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCATCCTACTTACAATTCAACCCAAACAATCAACAAATCGTGCCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCAGAAAATTTCCTCGATTCATCCTGCCTCACCGTAAGTCCTCCCTCCATTTTCAATTTTCCGCCATTTTCGATTCAGTTCAGATCGTTTCGAGCTCCTAATTACATCAAATCAATAAATCGATGCAGCAATTTCAACCCTCTTCCGGGTGGGACGTGGATTTACAGAATCTCTACAATGTGGGTTTCGATCAAGGAAGATCATCCAACGCCTTTTCATCTCAACCATATACAGGTTCAATGGAAGGAAGCAATATAA 1443 47.19 MMNRALPEMLHCLNNAGNCPDTLTVLERQRARLKWQQDQLLHQQHQPMSQSCFNRVDYGGGFPPPVAVPADHLTGFPGFMSGGGGGLSLVEMVMGAVKPDPGLEDGWSEMDKFDPSLLLNATAYELNSSLSRTSSCPPAVTPAVAEKIESPAGRESFKKRKAEKVHNTTTNNKVTVEEDNNNNNKEKRIKASAEEGELSKTTDQNSTKNNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRFDINVDDLFTKEVFPPPCTTANFPAIGGMSSEMTDPSSYLQFNPNNQQIVPCCGLEMGINTSDVALRRTISAPVSFPENFLDSSCLTVSPPSIFNFPPFSIQFRSFRAPNYIKSINRCSNFNPLPGGTWIYRISTMWVSIKEDHPTPFHLNHIQVQWKEAI 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7608675 7611859 - Tan0005387.2 Tan02g0787 743413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0787 480 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 155 355 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan02g0787 480 MobiDBLite consensus disorder prediction 179 197 - -
Tan02g0787 480 Gene3D - 249 321 IPR036638 GO:0046983(InterPro)
Tan02g0787 480 Pfam Helix-loop-helix DNA-binding domain 256 303 IPR011598 GO:0046983(InterPro)
Tan02g0787 480 CDD bHLH_AtBPE_like 242 327 - -
Tan02g0787 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 302 IPR011598 GO:0046983(InterPro)
Tan02g0787 480 MobiDBLite consensus disorder prediction 227 241 - -
Tan02g0787 480 FunFam Basic helix-loop-helix transcription factor 249 321 - -
Tan02g0787 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 319 IPR036638 GO:0046983(InterPro)
Tan02g0787 480 SMART finulus 258 308 IPR011598 GO:0046983(InterPro)
Tan02g0787 480 MobiDBLite consensus disorder prediction 151 167 - -
Tan02g0787 480 MobiDBLite consensus disorder prediction 145 241 - -
Tan02g0787 480 MobiDBLite consensus disorder prediction 198 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0787 Tan-Chr2:7608675 Tan05g1302 Tan-Chr5:15486171 1.20E-45 dispersed
Tan02g0786 Tan-Chr2:7608675 Tan02g0787 Tan-Chr2:7608675 4.50E-199 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26717 PF00010 HLH 1.40E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0787 - - - 0.0