Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0806 ATGTCTGTTTCCGAGCTTAAGGAGCGGCATGTGACGGCTATTGAGACGGTCAACTCTCTCAGAGAACGCTTGAAGGAGAAGAGGCGTTCGTTGCTCGACACTGATGTAGCTGGGTTTGCGAGGTCTCAGGGGAAGCGTCCCGTCTGTTTCGGGGCTACGGATCTCGTCTGCTGTAGGACTCTGCAGGGTCATACTGGAAGGGTGTATTCGTTGGATTGGACTTCAGAGAGGAATCGAATTGTCAGTGCATCTCCAGATGGGCGTTTAATAGTGTGGAATGCTCTAACAAGCCAGAAGACTCATGCCATAAAACTACCTTGTCCGTGGGTCATGACTTGCGCTTTCTCACCTTCTGGTCAATCAGTAGCGGGTGGTGGTCTTGACAGTGTTTGTTCTATCTTCAACCTCAACTCTCCAAATGACAGGGAAGGGAATCTGCCAGTGTCTAGAACGCTTAGCGGGCATAAAGGGTATGTTTCCTCTTGTCAATATGTTCCAAATGACGACAATCACCTCATTACTGGTTCTGGGGATCAGACGTGTGTCTTATGGGATATTACTACTGGACTTCGAACGTCTGTTTTTGGGGGTGAATTTCAGTCAGGACATGCAGCAGATGTATTGAGTGTATCTATTAGCGGATCCAATACATTTATTTCTGGTTCTTGTGATGCAACTGCTCGCCTGTGGGACACTCGGGTAGCTAGTCGAGCGGTACAAACGTTTCATGGGCATGACGGAGACGTTAATGCAGTGAAGTTCTTTCCAGATGGTAACCGGTTTGGAACTGGTTCTGATGATGGAACTTGCAGACTATTTGATATCAGAACTGGGCATGTACTCCAAGTTTACCATCAGCTGCACAGTGATAATACCAACTCACACGTAACCTCCATTGCATTCTCTATATCTGGAAGGCTCTTGTTTGCTGGATACAAAAATGGTGATTGCTATGTGTGGGACACTTTACTTGCACAGATGGTTTTGAACTTGGGAACACTTCAGAACTCACACGAAGGGCGAATCAGTTGCTTGGGTTTGTCTGCTGATGGAAGTGCTTTATGTACAGGAAGTTGGGATTCAAACCTGAAGATATGGGCTTTTGGAGGTCATCGGAAGGTAAATTAA 1128 46.63 MSVSELKERHVTAIETVNSLRERLKEKRRSLLDTDVAGFARSQGKRPVCFGATDLVCCRTLQGHTGRVYSLDWTSERNRIVSASPDGRLIVWNALTSQKTHAIKLPCPWVMTCAFSPSGQSVAGGGLDSVCSIFNLNSPNDREGNLPVSRTLSGHKGYVSSCQYVPNDDNHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHAADVLSVSISGSNTFISGSCDATARLWDTRVASRAVQTFHGHDGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHVLQVYHQLHSDNTNSHVTSIAFSISGRLLFAGYKNGDCYVWDTLLAQMVLNLGTLQNSHEGRISCLGLSADGSALCTGSWDSNLKIWAFGGHRKVN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8204575 8208813 + Tan0003539.1 Tan02g0806 743432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 278 - -
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 366 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 240 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Tan02g0806 375 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Tan02g0806 375 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Tan02g0806 375 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Tan02g0806 375 PIRSF GNBP_B 1 369 - -
Tan02g0806 375 SMART WD40_4 327 367 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 SMART WD40_4 277 321 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 SMART WD40_4 145 185 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 SMART WD40_4 96 135 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 SMART WD40_4 192 231 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 SMART WD40_4 54 93 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 SMART WD40_4 235 274 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 FunFam Guanine nucleotide-binding protein subunit beta 2 367 - -
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 335 375 - -
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Tan02g0806 375 SUPERFAMILY WD40 repeat-like 54 366 IPR036322 GO:0005515(InterPro)
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 6 367 IPR016346 GO:0005737(PANTHER)|GO:0005834(PANTHER)|GO:0007165(InterPro)|GO:0007186(PANTHER)|GO:0030159(PANTHER)
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 Gene3D - 3 367 IPR015943 GO:0005515(InterPro)
Tan02g0806 375 Pfam WD domain, G-beta repeat 336 366 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 Pfam WD domain, G-beta repeat 56 93 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 Pfam WD domain, G-beta repeat 292 321 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 Pfam WD domain, G-beta repeat 109 135 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 Pfam WD domain, G-beta repeat 201 231 IPR001680 GO:0005515(InterPro)
Tan02g0806 375 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Tan02g0806 375 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Tan02g0806 375 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Tan02g0806 375 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Tan02g0806 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 233 - -
Tan02g0806 375 Coils Coil 3 34 - -
Tan02g0806 375 CDD WD40 57 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0806 K04536 - - csv:101218729 704.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007608 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36