Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0809 ATGCACCATTTGCCATTATATGTGAATAAGAAGTTTAGTAATCAATACAAGGCCACCATTGGAGCTGACTTTTTGACTAAAGAGGTGCAATTTGAAGATAGACTTTTCACTTTGCAGATATGGGATACAGCAGGCCAGGAACGATTCCAAAGTCTTGGTGTTGCTTTTTACAGAGGTGCTGATTGCTGCGTTCTGGTGTATGATGTCAATTCAATGAAATCATTTGACAACCTTAACAACTGGCGGGAAGAATTCCTTATCCAGGCGAGCCCTTCAGATCCGGAAAATTTTCCCTTCGTTGTTTTAGGAAATAAAGTTGACGTTGATGGTGGAAACAGTAGAGTTGTTTCAGAGAAAAAGGCACGAGCTTGGTGTGCATCAAAAGGAAATATCCCATACTTTGAAACTTCTGCCAAAGAAGGCATTAACGTAGAAGAAGCCTTCCAATGCATTGCGAAAAATGCCCTCAAGAGTGGGGAAGAGGAAGAGATATACTTACCCGACACTATCGATGTTGCAATCAACAATCAGCCAAGATCATCTGGATGCGACTGTTGA 558 41.4 MHHLPLYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVAINNQPRSSGCDC 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8267778 8270979 + Tan0012134.2 Tan02g0809 743435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0809 185 Gene3D - 4 168 IPR027417 -
Tan02g0809 185 NCBIfam small GTP-binding protein domain 9 151 IPR005225 GO:0005525(InterPro)
Tan02g0809 185 PANTHER RAB FAMILY 7 181 - GO:0005774(PANTHER)
Tan02g0809 185 CDD Rab7 7 161 - -
Tan02g0809 185 SMART rab_sub_5 7 158 - -
Tan02g0809 185 Pfam Ras family 7 155 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan02g0809 185 SMART ras_sub_4 4 158 - -
Tan02g0809 185 FunFam Ras-related protein Rab7 2 168 - -
Tan02g0809 185 ProSiteProfiles small GTPase Ras family profile. 1 185 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan02g0809 185 SMART rho_sub_3 4 158 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan02g0809 185 SMART ran_sub_2 1 185 - -
Tan02g0809 185 PRINTS Transforming protein P21 ras signature 29 51 - -
Tan02g0809 185 PRINTS Transforming protein P21 ras signature 11 27 - -
Tan02g0809 185 PRINTS Transforming protein P21 ras signature 95 108 - -
Tan02g0809 185 PRINTS Transforming protein P21 ras signature 133 155 - -
Tan02g0809 185 ProSiteProfiles small GTPase Rab1 family profile. 1 185 - -
Tan02g0809 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 161 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0809 K07897 - - csv:101218255 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0809 Tan-Chr2:8267778 Tan06g0299 Tan-Chr6:2332974 1.40E-93 dispersed
Tan02g0808 Tan-Chr2:8267778 Tan02g0809 Tan-Chr2:8267778 1.60E-103 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74