Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0900 ATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTCAACAAGCTCGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAGCCACTTGCTATCTCGTCCTTCAGTGTGAGAAGGTCCAGCCGTTTTGCGGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTGTTAGAAGGACCTATCAACGGAGGGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACATTCAATCTAGCCTGGAATCTAGGTACCCAAGTTTTGTGAAGCCCATGCTTCAGTCACATGTCACCGGAGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGAATCACCTTCCCCATGAGGATGAAATGGTTACTTTGGTGGACGAGGATGAAAATGAATTCCAAGCAAAATACCTTGCCGAGAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCACTTAACCAAGCAAACTGAATTTAAGGTATATATCATCAGGGCATACAATTTGGAAGACAAAGAAGATACCAATGAGGATTCCGATGACAAGCAATTGGAAAAAAGTGGCAAAAGAAATACCAGATCATCAGGGCATAAAAGCAGGGCAAATAACTCTGAAGATAAAGCAGACAAAGCAGATAAAGGCGAGAATTCCAATGTCCCTCAATTGGAACAGAGTGGCAAGAGAACTACTAGATCAGCTAGTAAAGGGAAGAAGTAA 873 44.79 MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQPLAISSFSVRRSSRFADKPPPNYKEVPIEPLPGVRRTYQRRDLLNRVYASHEERQYAIDRARDIQSSLESRYPSFVKPMLQSHVTGGFWLGLPVQFCKNHLPHEDEMVTLVDEDENEFQAKYLAEKTGLSGGWRGFSIDHQLVDGDALVFHLTKQTEFKVYIIRAYNLEDKEDTNEDSDDKQLEKSGKRNTRSSGHKSRANNSEDKADKADKGENSNVPQLEQSGKRTTRSASKGKK 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10265319 10267931 + Tan0003274.1 Tan02g0900 743526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0900 290 CDD B3_DNA 126 217 IPR003340 GO:0003677(InterPro)
Tan02g0900 290 MobiDBLite consensus disorder prediction 32 56 - -
Tan02g0900 290 MobiDBLite consensus disorder prediction 251 268 - -
Tan02g0900 290 SMART B3_2 128 219 IPR003340 GO:0003677(InterPro)
Tan02g0900 290 MobiDBLite consensus disorder prediction 63 82 - -
Tan02g0900 290 MobiDBLite consensus disorder prediction 225 290 - -
Tan02g0900 290 Coils Coil 6 33 - -
Tan02g0900 290 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Tan02g0900 290 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 222 IPR044837 -
Tan02g0900 290 Gene3D - 102 221 IPR015300 -
Tan02g0900 290 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677(InterPro)
Tan02g0900 290 Pfam B3 DNA binding domain 128 218 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0900 Tan-Chr2:10265319 Tan02g1875 Tan-Chr2:86676725 3.90E-55 dispersed
Tan01g0715 Tan-Chr1:6836894 Tan02g0900 Tan-Chr2:10265319 9.30E-36 wgd
Tan02g0900 Tan-Chr2:10265319 Tan02g1874 Tan-Chr2:86648614 1.60E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26728 PF02362 B3 2.80E-16 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0900 - - - 0.0