Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0904 ATGAAAAAATCCAAAAAAAACAAAATGACCCTTCTCAATTCCATCTGCTTCTTCTTCTTCCTCCTCCGCTTCACCGCCGCCTCTTCTCCCGGTCCTCGAGGGTATCTTCTCAATTGCGGTGGTACCGAGTCGGGCGCCAAGGTCACCGTCGGCAGCCTCCAGTACATCACCGACGAGGGCTTCACCTCCGTCGGAAACACCACCAAGCTCCACGATCCAAATCTCGTGCCGATTCTGTCCACATTGCGCTATTTTCCCGACAAATCGGCTCGGAAATACTGCTACGCGATTCCGGTGGTTAAGGGCGGGAAATATCTCGTGAGGACGACGTATTTCTACGGCGGATACGACGGCGGTAAGGAACCGCCGGTGTTCGACCAGATTGTGGAAGGGACCAAATGGAGCATCGTGAACACGACGGAGGATTACGCGAATGGGTTGTCATCGTATTACGAGGTTGTGGCGGTGGCGATGGGGAAGATGATGAGCGTTTGCTTGGCGAGGAATCAGCATACGGATTCGACTTCGAATCCTTTCATTTCGGCTTTGGAATTGGAGTATTTGGAGGACTCTGTTTATAACACCACGGATTTCAAGAACTATGCTCTGAGTATGGTTGCTAGAAACAGCTATGGACATGACGTTGATATCATTGGCTTTCCAGATGATGCATTCAACCGGCTATGGCATCCATTTGTTGATGAGAACCCCTTGGTAACATGTCGTGCCAATGTTACTTCTACAAACTTTTGGAATCTCCCACCAACAAAGGCTTTTAACACTGCCATGACGACCAGCCGCGGGAAGTCGCTCAAAATCAACTGGCCTCCTTTCCCACTTCCAGCAGCCTACTACTACATCTCACTATACTTTCAGGACAATCGGTCCCCGAGTCCATATAGCTGGAGGGTCTTTAGTGTTGCAATAAATGGCAAGAACTTCTTTACAAACCTCAACGTGTCCGCTAATGGCGTGTCTGTTTACAGTGCGAAATGGCCTTTATCTGGACAGACCAACATAGAACTAACTCCTACAGATGACATGCCCGTTGGGCCTGTGATTAATGCTGCTGAGATCCTTCAGCTTTTTCCTCTTGGTGGAAGGACATTAACTAGAGATGTGATGGCAATGGAGGACTTGGCTAGAAGCTTCAACAACCCGCCCCATGATTGGAGTGGCGATCCTTGCTTGCCTAAGGATAATTCGTGGACCGGAGTTTCTTGTTCCAATGGAAGACTTGCTCGAGTCACCACTTTGAACTTGACAAACTTCGGGTTATCTGGAACACTTCCTTCAAGCATAAACAATTTAACTGCCCTCTCTCATCTTTGGCTTGGTAACAACAAGCTCTCAGGCTCCATTCCAGAAATGGGTTCGTTGAAGGAGTTACAAACCTTGCATCTGGAAAAGAACCAATTTGAAGGGCCAATTCCTCATTCACTCTCCAAGCTTCCGCATATTCGTGAAATATTTCTCCAAAATAACGATCTGAAGTCGAAAACTCTCGGAGCACTGCAGAAGCGAGGCATACACGTCGAGTAA 1542 48.12 MKKSKKNKMTLLNSICFFFFLLRFTAASSPGPRGYLLNCGGTESGAKVTVGSLQYITDEGFTSVGNTTKLHDPNLVPILSTLRYFPDKSARKYCYAIPVVKGGKYLVRTTYFYGGYDGGKEPPVFDQIVEGTKWSIVNTTEDYANGLSSYYEVVAVAMGKMMSVCLARNQHTDSTSNPFISALELEYLEDSVYNTTDFKNYALSMVARNSYGHDVDIIGFPDDAFNRLWHPFVDENPLVTCRANVTSTNFWNLPPTKAFNTAMTTSRGKSLKINWPPFPLPAAYYYISLYFQDNRSPSPYSWRVFSVAINGKNFFTNLNVSANGVSVYSAKWPLSGQTNIELTPTDDMPVGPVINAAEILQLFPLGGRTLTRDVMAMEDLARSFNNPPHDWSGDPCLPKDNSWTGVSCSNGRLARVTTLNLTNFGLSGTLPSSINNLTALSHLWLGNNKLSGSIPEMGSLKELQTLHLEKNQFEGPIPHSLSKLPHIREIFLQNNDLKSKTLGALQKRGIHVE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10286240 10290212 - Tan0002694.2 Tan02g0904 743530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0904 513 Gene3D Ribonuclease Inhibitor 370 507 IPR032675 -
Tan02g0904 513 Pfam Leucine Rich Repeat 463 484 IPR001611 GO:0005515(InterPro)
Tan02g0904 513 Pfam Leucine Rich Repeat 440 456 IPR001611 GO:0005515(InterPro)
Tan02g0904 513 ProSiteProfiles Leucine-rich repeat profile. 439 461 IPR001611 GO:0005515(InterPro)
Tan02g0904 513 Pfam Malectin-like domain 37 361 IPR024788 -
Tan02g0904 513 PANTHER OS07G0107800 PROTEIN-RELATED 36 483 - -
Tan02g0904 513 Gene3D - 210 362 - -
Tan02g0904 513 Gene3D - 34 187 - -
Tan02g0904 513 SUPERFAMILY L domain-like 376 500 - -
Tan02g0904 513 FunFam Leucine-rich repeat receptor-like kinase 372 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0904 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0904 Tan-Chr2:10286240 Tan06g2541 Tan-Chr6:78116918 3.70E-117 dispersed
Tan02g0903 Tan-Chr2:10286240 Tan02g0904 Tan-Chr2:10286240 8.20E-282 tandem
Tan02g0904 Tan-Chr2:10286240 Tan02g0905 Tan-Chr2:10287042 1.50E-275 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g421 . . . . . . . . Cmo19g00625 . . . . . Sed05g2434 . Cpe15g00491 Bhi05g01125 Tan02g0904 Cmetu01g2340 . Hepe02g0582 . . Cla02g00596 Cam02g0625 Cec02g0625 Cco02g0640 Clacu02g0629 Cmu02g0625 Cre02g0949 Cone12ag1096 . . . . Csa07g00765 . Cme01g00044 Blo04g00489 . . Bda14g00519 . . Bma03g00519 . . . . . Cma19g00607 . Car19g00461 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009605 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 33