Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0926 ATGGCTCAGGTTCCACCTCCACCTCAAGTTTCCGGCGCCGATCCAGCGGCCAATGGTGGGGCAAACCAGCATGTGACGACGTCGTTGTATGTTGGAGATCTTGACGTGAATGTCACCGATTCACAGCTCTATGATCTTTTTAATCAGGTCGGCCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGATCGCTTGGTTATGGTTATGTCAATTACAGCAACCCAGTGGATGCATCAAGGGCATTAGATGTGTTAAACTTCACCCCTTTGAATGGAAATCCTATTAGAGTTATGTATTCGCATCGCGACCCTAGTGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTTTCTGCCTTTGGAAACATTCTATCCTGCAAGGTTGCTACAGATGCATCCGGCCAGTCCAAAGGCTTTGGTTTTGTGCAATTTGACACTGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTAAACGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGATAGTGTCAGTGAGAAAACAAAGTTTAATAATGTTTTTGTTAAGAATCTCTCAGAAACTACATCTGAAGAAGATTTGAAGAATATGTTTGGCGAGTTTGGACCAATCACCAGTGTCGTGGTGATGAGGGATGGGGATGGAAAATCAAAATGCTTCGGCTTTGTGAACTTTGAGAGTACAGACGATGCTGCTAGGTCTGTTGAAGCACTTAACGGAAGGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAAAATCGATTTGAGCAGAGCGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATGCAAGGTTATGCGAGACCCTAATGGAATAAGTAGAGGATCGGGTTTTGTTGCATTCTCAACTCCTGAAGAGGCTGCTAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAAGAAGATAGAAGAGCTAGATTGCAGGCACAGTTTTCCCAAATGCAACCAATGACAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTTTTTGTACCAATGGTTCAACAAGGCCAGCAGGGGCAAAGATCTGGTGGCAGGCGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCATTGATGCAGCAGCAGATGCTCCCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCCGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGTATGCCACCACGGGATGCTGTCCACCCTCAACCAATTCCTGTTGGAGCTTTGGCTTCTGCCCTCGCAAATGCAACTCCAGACCAGCAAAGAACGATGCTGGGGGAAAATCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCAGCAAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCGGAGGCTCTGAAAGCCAAGGTGGCGGAGGCTATGGAGGTCTTAAGAAGTGTCGCTCAGCAGACAGGCAATGCAGCTGATCAATTGGCTTCACTCTCCCTTACTGACAACCTTGATTCCTAA 1944 46.5 MAQVPPPPQVSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDASGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERDSVSEKTKFNNVFVKNLSETTSEEDLKNMFGEFGPITSVVVMRDGDGKSKCFGFVNFESTDDAARSVEALNGRKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFSAFGTITSCKVMRDPNGISRGSGFVAFSTPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMTMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPIPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10989986 10994277 - Tan0007468.1 Tan02g0926 743552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0926 647 CDD RRM3_I_PABPs 205 284 - -
Tan02g0926 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723(InterPro)
Tan02g0926 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 SMART rrm2_1 310 382 IPR003954 GO:0003676(InterPro)
Tan02g0926 647 SMART rrm2_1 28 101 IPR003954 GO:0003676(InterPro)
Tan02g0926 647 SMART rrm2_1 116 188 IPR003954 GO:0003676(InterPro)
Tan02g0926 647 SMART rrm2_1 207 279 IPR003954 GO:0003676(InterPro)
Tan02g0926 647 SMART poly_2 562 625 IPR002004 GO:0003723(InterPro)
Tan02g0926 647 SUPERFAMILY RNA-binding domain, RBD 206 390 IPR035979 GO:0003676(InterPro)
Tan02g0926 647 FunFam Polyadenylate-binding protein 113 196 - -
Tan02g0926 647 CDD RRM1_I_PABPs 28 107 IPR034364 -
Tan02g0926 647 SUPERFAMILY PABC (PABP) domain 491 636 IPR036053 GO:0003723(InterPro)
Tan02g0926 647 Pfam Poly-adenylate binding protein, unique domain 557 622 IPR002004 GO:0003723(InterPro)
Tan02g0926 647 FunFam Polyadenylate-binding protein 546 628 - -
Tan02g0926 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 SMART rrm1_1 116 188 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 SMART rrm1_1 207 279 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 SMART rrm1_1 28 101 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 SMART rrm1_1 310 382 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 Gene3D - 294 395 IPR012677 -
Tan02g0926 647 Gene3D - 16 116 IPR012677 -
Tan02g0926 647 MobiDBLite consensus disorder prediction 1 21 - -
Tan02g0926 647 FunFam Polyadenylate-binding protein 14 112 - -
Tan02g0926 647 FunFam Polyadenylate-binding protein 197 291 - -
Tan02g0926 647 FunFam Polyadenylate-binding protein 292 397 - -
Tan02g0926 647 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 28 623 IPR006515 GO:0003723(InterPro)
Tan02g0926 647 Gene3D - 196 293 IPR012677 -
Tan02g0926 647 Pfam RNA recognition motif 117 184 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 Pfam RNA recognition motif 311 379 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 Pfam RNA recognition motif 29 99 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 Pfam RNA recognition motif 208 276 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 PANTHER RNA BINDING PROTEIN 21 207 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Tan02g0926 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723(InterPro)
Tan02g0926 647 CDD RRM2_I_PABPs 113 189 IPR045305 -
Tan02g0926 647 CDD RRM4_I_PABPs 308 386 - -
Tan02g0926 647 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676(InterPro)
Tan02g0926 647 Gene3D - 545 629 - -
Tan02g0926 647 Gene3D - 117 195 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0926 Tan-Chr2:10989986 Tan11g1085 Tan-Chr11:8607392 4.60E-189 dispersed
Tan01g2518 Tan-Chr1:34644706 Tan02g0926 Tan-Chr2:10989986 9.30E-06 transposed
Tan10g0066 Tan-Chr10:998097 Tan02g0926 Tan-Chr2:10989986 2.70E-16 transposed
Tan10g1187 Tan-Chr10:11963595 Tan02g0926 Tan-Chr2:10989986 6.30E-29 transposed
Tan11g0914 Tan-Chr11:7448967 Tan02g0926 Tan-Chr2:10989986 8.70E-06 transposed
Tan01g0686 Tan-Chr1:6535752 Tan02g0926 Tan-Chr2:10989986 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0926 K13126 - csv:101223017 1176.77