Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1087 ATGGAGACATCATCTATGGTGGTTTTTTCTGATATGGGAATGGAGGATAGTGGCTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGCATACTCCCATTAGCAGCAGCTTTTGGGGAGAATTTGCAACATTCTTATGCTCAGACAAACCTTGACCAGAAGGCTTCTTCAAACCATTCTCACAATGCCATATTTGGGTATGTGAAACAGCTCAAAACTGATGGGTGGAGTTCTTACCAAACAACTAATCATATGCCAAACTCACAAGTCATTGCTTATCCGACCACATCTGTTTCGGCTTCCAACTACACGAGCCAAATGGACTTCTCGAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATCAGCAACCTCCCTTCTGATATGTTGATATCTCAGGGCTCGTTACACCACCAAAGCCATGTAACCAAGTCCTACCGTGGAACGAAAAGAACCGCTACAAACAGTAGATTCCCCCAGGCTCAAGATCACATTCTTGCTGAGAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTTATTGCTTTGTCTGCTATTGTTCCTGGCCTTAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTGCAGGAGAAAGTGAAGATACTAGAGGAACAAACTCGCAGGAAAGACATCGAATCCGTGGTGTTCGTCAAGAAATCTCAATTTTCTGCTGATGGAAACAATACATCAAAAGAGGAGGACGAGCCACTTCCTGAGATTGAAGCAAGATTTTGTGACAAGAATGTCCTGATAAGAATACACTGTGAGAAAAGGAAAGATGTCATAGAGAAGACAATTGCTGGAATTGAAAAGTTGCACCTAACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGACTTGCTCTTGACATAACCATTATTGCTCAGATGGATAACGAATTCCGTTTGTCGCTAAAGGACCTCGTGAAAAAGTTGCAGTCGACTTTCAGCCCATTCCAATGA 1008 43.75 METSSMVVFSDMGMEDSGFVNQWHKSSMDELGILPLAAAFGENLQHSYAQTNLDQKASSNHSHNAIFGYVKQLKTDGWSSYQTTNHMPNSQVIAYPTTSVSASNYTSQMDFSRPKEEVVCPQSISNLPSDMLISQGSLHHQSHVTKSYRGTKRTATNSRFPQAQDHILAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSQFSADGNNTSKEEDEPLPEIEARFCDKNVLIRIHCEKRKDVIEKTIAGIEKLHLTIVNSSVMSFGRLALDITIIAQMDNEFRLSLKDLVKKLQSTFSPFQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18735197 18737919 - Tan0003575.1 Tan02g1087 743713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1087 335 Coils Coil 200 227 - -
Tan02g1087 335 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Tan02g1087 335 Gene3D - 159 231 IPR036638 GO:0046983(InterPro)
Tan02g1087 335 CDD bHLH_AtNAI1_like 163 235 - -
Tan02g1087 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Tan02g1087 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983(InterPro)
Tan02g1087 335 PANTHER BHLH TRANSCRIPTION FACTOR 12 331 IPR052610 -
Tan02g1087 335 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1087 Tan-Chr2:18735197 Tan03g1732 Tan-Chr3:73247987 2.90E-46 dispersed
Tan02g1087 Tan-Chr2:18735197 Tan01g1458 Tan-Chr1:14746161 2.50E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26737 PF00010 HLH 4.10E-10 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1087 - - - 0.0