Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1093 ATGGCGTCTGAGATTGAGGTCGTGGCATCACTTGGCTCGAAATCTCAGACAAACCCTGAAGTTTCCATTGTAGACGTCTACTCCGCTTGTGCTTATGGTGATTTCCAGAAAGTGAGGAGTTTTGTTGAAGAGGATGGAGCTTCTCTTTTGGTTCCCGATTCCAACGGGTACTATGCTCTGCAATGGGCTGCTCTAAACAACTTCCCCGATATCGTCCAGTACATCATTGAGCATGGAGCGGATGTCAATTCCTCTGACAAATTGCAGCAGACAGCGCTTCACTGGGCAGCAGTTCGGGGTTCAATTATGGCTGCAGACATGCTCCTGCTGAATGGAGCTCGAGTGGAGGCCATTGATATAAATGGGTATCGGGCAGTTCATGTTGCTGCTCAATACGGACAAACTGCATTCTTGAATCACATTGTTGCCAAATTCCATGCTGACTTTGACGTTCCAGATAATGAAGGGAGGAGTCCTCTTCATTGGGCTGCATACAAAGGGTTTGCAGATACAATTAGACTTCTTTTATTCAGAGATGCAAGCCAAGAAAGACAAGATAAAGAAGGTTGTACCCCTTTGCATTGGGCTGCAATAAGAGGAAACGTGGAGGCATGCACTGTTCTTGTGCATGCAGGAACAAAGAAAGAATTGTTGATCAAAGACAATGCCGGCTATACACCTTTTCAGCTTGCATCTGATAAAGGTCATCAGCAAATTGCTCATTTCCTCTCTAAAGCACAGCGGACGCATCACAGTCACTTGGGAGCAAAATTTTGTACTAGGAAGATTGAAAATTTTGGTTATGCCCCCATTTTACTGTGTGTCATCATCATTCTCGTGATCCTTTTCATCAATTCAGTTCTTGCAGGCTCTAATCTTGCAAAGGTTACTGCTGTTATTGGACTTTGGGCGTGGACTGCCCTCTGTTTGGCTTTTGTTTCTCTGATAATGTTTTATAGGTGTAGTAGCAAAGATCCAGGTTATATAAAAAGACCCGGAGAGTTGGATAATCATACCAATACAGAGGATCCTTTGTTGAGCATTGATCTCAACAATTCTTCAGTATGGGTCGGGAATTGGTCTCAACTGTGCCCCACTTGCAAGATAATTAGGCCTGTTCGTTCTAAGCACTGTCCTACTTGTAATCGATGTGTGGAACAGTTTGACCATCACTGCCCGTGGATATCTAATTGTGTGGGAAAGGTGAGAAGTTGTGCTTGTTCTTAA 1227 44.09 MASEIEVVASLGSKSQTNPEVSIVDVYSACAYGDFQKVRSFVEEDGASLLVPDSNGYYALQWAALNNFPDIVQYIIEHGADVNSSDKLQQTALHWAAVRGSIMAADMLLLNGARVEAIDINGYRAVHVAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLLLFRDASQERQDKEGCTPLHWAAIRGNVEACTVLVHAGTKKELLIKDNAGYTPFQLASDKGHQQIAHFLSKAQRTHHSHLGAKFCTRKIENFGYAPILLCVIIILVILFINSVLAGSNLAKVTAVIGLWAWTALCLAFVSLIMFYRCSSKDPGYIKRPGELDNHTNTEDPLLSIDLNNSSVWVGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKVRSCACS 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18853418 18888669 - Tan0017853.2 Tan02g1093 743719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1093 408 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 ProSiteProfiles Ankyrin repeat region circular profile. 88 119 - -
Tan02g1093 408 SUPERFAMILY Ankyrin repeat 27 245 IPR036770 -
Tan02g1093 408 ProSiteProfiles Ankyrin repeat profile. 188 212 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 FunFam S-acyltransferase 142 250 - -
Tan02g1093 408 ProSiteProfiles DHHC domain profile. 362 400 - -
Tan02g1093 408 SMART ANK_2a 88 117 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 SMART ANK_2a 223 252 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 SMART ANK_2a 55 84 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 SMART ANK_2a 155 184 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 SMART ANK_2a 121 151 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 SMART ANK_2a 188 217 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 ProSiteProfiles Ankyrin repeat region circular profile. 55 87 - -
Tan02g1093 408 Pfam Ankyrin repeats (3 copies) 127 215 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 Pfam Ankyrin repeats (3 copies) 29 118 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 22 400 - GO:0000139(PANTHER)|GO:0016409(PANTHER)|GO:0018345(PANTHER)
Tan02g1093 408 ProSiteProfiles Ankyrin repeat profile. 55 87 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 FunFam S-acyltransferase 12 141 - -
Tan02g1093 408 ProSiteProfiles Ankyrin repeat region circular profile. 188 212 - -
Tan02g1093 408 ProSiteProfiles Ankyrin repeat region circular profile. 155 187 - -
Tan02g1093 408 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515(InterPro)
Tan02g1093 408 Pfam DHHC palmitoyltransferase 361 401 IPR001594 GO:0016409(InterPro)
Tan02g1093 408 Gene3D - 24 255 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1093 K20032 - - csv:101206919 761.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1093 Tan-Chr2:18853418 Tan08g0301 Tan-Chr8:2737254 1.90E-79 dispersed
Tan02g1092 Tan-Chr2:18853418 Tan02g1093 Tan-Chr2:18853418 4.30E-164 tandem
Tan02g1093 Tan-Chr2:18853418 Tan02g1094 Tan-Chr2:18859632 4.20E-164 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37