Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1117 ATGGCGTCTGCTGTTTTAGCGAATCGAAACAACGAACCTAGTTGGCCGTCGAGCAAGCGTAATGGCGGCAGTGGAGGAGGAGCGTTTATGGCGAGAGTTCCGTTCTCGAACCCTAAATCTAAACCTAATATGAAAAAGAGGAAAATTAATGGTGAAATTAACAACTTCCACCAGATGGGTGAAGAACTGGCCAACGTAACAACTCTATCTCCCTCGGATGACGGGTCTTCCATCGATCGTCACCATGGATCTTCGAACTCCGAGTACAATAAATATGTGAGTTTCAATATAGCTTCGTGTTCTGGGAGGGATTTGGTTGAGCTGAAAAAACGCCTACTCGCCGAGCTTGAACAAGTTAGGCGAATCAAGAATCGCATTGAATCTGGGGGCATTGGTTTTGGAACTAATTATTTCAAGAAATCGTCCAAGACCAAGGGTATTAACAAGCGGCCGAAGCCCCTGCCTAATTTTGGCAGAGATTTACAGGTGTCAAATTCGTTTGATGTTGGGAATCTGATGAAGACTTGCTCTCAAATCTTAAACAAGTTGATGAAGCAGAAGTATGGGTTGATCTTCAACAAGCCTGTGGACGTGGTTGGGCTGGGTCTCCATGACTATTATGACATTGTTAAGCGTCCTATGGATTTAGGGACTGTGAAATCTAAACTGGCTAAGAATCTATATGACTCACCTTTTGATTTTGCTGAAGATGTTAGGCTAACCTTTAATAATGCCATGATGTACAATCCCAAGGGTCATGATGTCCATGTCTTGGCTGAGCAGTGGTTGGTGAAATTTGAGGAATTCTATCGCCCTGTTGGTGAGAAGTTGGGTGAACTGAAGCAGCCAGATCTGTATGAGGAGGAATTGCAAGCCAGTTCTTGGAATCATCATGTAGAGGAGGTGGAGAAGGTGAACTTCAACACTAATGGGAACAAATCAGAAGAAGTAGGAGTGCCGTCGATCTCATCAAAACCACCTTCGATACAGTCACCAGTGAAAACCCCATCACCAGTACGGGCACCGCAGGTGAAGCCTGTAAGGCAGCCAAAACCAAAGGCGAAGGACCCCATCAAAAGGGAAATGAGTTTAGAGGAGAAACACAGATTGGGAGTTGGATTGCAGGGTTTGCCTCCTGAGAAAATGGATCAAGTGATACAGATTGTGAAGAGGAGGAGTGGTCAATTGAGGCAAGATGGGGACGAGATTGAGCTTGACATTGAAGCAGTTGATACAGAGACCCTTTGGGAACTCGACCGGCTGGTCACGAATTGGAAGAAAATGATGAGCAAAGTCAAGCGGCAAGCTCTCTTCAATAACAATGCAAATGCTGATTCAATCAAAGCGAATAATGAGATATCATCTGCAAATGAGATGAATGAGGCTAAAACAGAAGCGAAGAAGCCTAGAAAAGGGGATGTGGGTGAGGAAGATGTAGACATTGGGGATGAGATGATGCCAATGGGTGGATTCCCTCCTGTCGAAATTGAAAGAGATGCAGCTGCTCATGCTAGTAGTAGTTCTGATAGCTCAAGTAGTTCAGGGAGTGATGATTCTTCCTCCTCAAGTGGTTCCGATTCAGAAGATAGCTCGTCTGATAGTGATTCGGATGGTGATGGCCAATCATAG 1629 44.94 MASAVLANRNNEPSWPSSKRNGGSGGGAFMARVPFSNPKSKPNMKKRKINGEINNFHQMGEELANVTTLSPSDDGSSIDRHHGSSNSEYNKYVSFNIASCSGRDLVELKKRLLAELEQVRRIKNRIESGGIGFGTNYFKKSSKTKGINKRPKPLPNFGRDLQVSNSFDVGNLMKTCSQILNKLMKQKYGLIFNKPVDVVGLGLHDYYDIVKRPMDLGTVKSKLAKNLYDSPFDFAEDVRLTFNNAMMYNPKGHDVHVLAEQWLVKFEEFYRPVGEKLGELKQPDLYEEELQASSWNHHVEEVEKVNFNTNGNKSEEVGVPSISSKPPSIQSPVKTPSPVRAPQVKPVRQPKPKAKDPIKREMSLEEKHRLGVGLQGLPPEKMDQVIQIVKRRSGQLRQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKVKRQALFNNNANADSIKANNEISSANEMNEAKTEAKKPRKGDVGEEDVDIGDEMMPMGGFPPVEIERDAAAHASSSSDSSSSSGSDDSSSSSGSDSEDSSSDSDSDGDGQS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22127002 22129664 - Tan0010671.1 Tan02g1117 743743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1117 542 MobiDBLite consensus disorder prediction 461 477 - -
Tan02g1117 542 MobiDBLite consensus disorder prediction 1 21 - -
Tan02g1117 542 MobiDBLite consensus disorder prediction 310 337 - -
Tan02g1117 542 MobiDBLite consensus disorder prediction 310 359 - -
Tan02g1117 542 PANTHER OSJNBA0053K19.4 PROTEIN 55 536 - -
Tan02g1117 542 PRINTS Bromodomain signature 187 200 IPR001487 GO:0005515(InterPro)
Tan02g1117 542 PRINTS Bromodomain signature 237 256 IPR001487 GO:0005515(InterPro)
Tan02g1117 542 PRINTS Bromodomain signature 203 219 IPR001487 GO:0005515(InterPro)
Tan02g1117 542 PRINTS Bromodomain signature 219 237 IPR001487 GO:0005515(InterPro)
Tan02g1117 542 MobiDBLite consensus disorder prediction 449 542 - -
Tan02g1117 542 Gene3D - 159 276 IPR036427 GO:0005515(InterPro)
Tan02g1117 542 ProSiteProfiles NET domain profile. 352 433 IPR027353 -
Tan02g1117 542 MobiDBLite consensus disorder prediction 503 529 - -
Tan02g1117 542 Pfam Bromodomain 176 260 IPR001487 GO:0005515(InterPro)
Tan02g1117 542 SMART bromo_6 165 275 IPR001487 GO:0005515(InterPro)
Tan02g1117 542 Pfam Bromodomain extra-terminal - transcription regulation 361 423 IPR027353 -
Tan02g1117 542 SUPERFAMILY Bromodomain 167 275 IPR036427 GO:0005515(InterPro)
Tan02g1117 542 MobiDBLite consensus disorder prediction 1 45 - -
Tan02g1117 542 Coils Coil 105 125 - -
Tan02g1117 542 Gene3D - 356 432 IPR038336 -
Tan02g1117 542 ProSiteProfiles Bromodomain profile. 184 256 IPR001487 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1117 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1117 Tan-Chr2:22127002 Tan02g1119 Tan-Chr2:22127002 1.80E-287 dispersed
Tan02g1117 Tan-Chr2:22127002 Tan02g1118 Tan-Chr2:22127002 1.80E-287 tandem
Tan01g0575 Tan-Chr1:5351760 Tan02g1117 Tan-Chr2:22127002 1.10E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80