Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1130 ATGTTGCAATTTTCGATTCGGCGAGTGAGGAAATTGAATGTTCTGAGGCCTCAGATCTTTGCTTTTGGAAATTCTCGATTCTCCACCTCTGCTGAACCGTCTTCCAAGCCTAATCCTCCGAGGGTTCCGAATCTCATAGGAGGGACTTTTGTTGATTCTCAATCCTCAGCATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACCACGAATGAAGAATTTAAAGCTGCAGTATCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGGATTATGTTTAAGCTTCAAGAACTTATCCGGCGAGATATTGATAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTGTCACATGGAATTGATTCGTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCATTCAATTTTCCAGCCATGATCCCCCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTCTGAAACCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTCGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACCAATGATGTTGTTAATTCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCGTAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAAGATAAACTTGTAGAACGTGCCAAATCTCTGAAGGTAAATTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATTGATAGTGGAGCCAGGCTATTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCAACTATCTTAACAGACGTGACGCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGGAAGTTTAGAGGAGGCCATTAGCATCGTTAATGGAAATAGGTATGGCAATGGAGCTTCCATATTCACCACATCTGGGATAGCGGCGAGGAAGTTTCAAACAGATATTGAAGCTGGACAGGTTGGGATCAACGTCCCGATTCCAGTTCCCTTACCGTTCTTCTCCTTCACCGGCTCCAAGGCATCTTTTGCTGGGGACCTCAATTTTTATGGCAAGGCTGGAGTTAATTTCTTCACTCAGATCAAAACAGTGACACAACAATGGAAAGACTCACCTGGAGGAACCGCAGTCAACCTTGCAATGCCAACCTCTCTCAAATCATAG 1614 43.93 MLQFSIRRVRKLNVLRPQIFAFGNSRFSTSAEPSSKPNPPRVPNLIGGTFVDSQSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDSYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNSICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASVDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKSLKVNSGTEPDADLGPVISKQAKERIHRLVQSGIDSGARLLLDGRNIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAGSLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSPGGTAVNLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22734620 22743143 + Tan0013018.1 Tan02g1130 743756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1130 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 9 534 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Tan02g1130 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Tan02g1130 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491(InterPro)
Tan02g1130 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491(InterPro)
Tan02g1130 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491(InterPro)
Tan02g1130 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620(InterPro)
Tan02g1130 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
Tan02g1130 537 SUPERFAMILY ALDH-like 38 519 IPR016161 GO:0016491(InterPro)
Tan02g1130 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491(InterPro)
Tan02g1130 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1130 Tan-Chr2:22734620 Tan03g1777 Tan-Chr3:73510572 8.80E-194 dispersed
Tan02g1130 Tan-Chr2:22734620 Tan02g1131 Tan-Chr2:22734620 2.00E-246 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1130 K00140 - csv:101204924 1008.05