Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1130 ATGTTGCAATTTTCGATTCGGCGAGTGAGGAAATTGAATGTTCTGAGGCCTCAGATCTTTGCTTTTGGAAATTCTCGATTCTCCACCTCTGCTGAACCGTCTTCCAAGCCTAATCCTCCGAGGGTTCCGAATCTCATAGGAGGGACTTTTGTTGATTCTCAATCCTCAGCATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACCACGAATGAAGAATTTAAAGCTGCAGTATCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGGATTATGTTTAAGCTTCAAGAACTTATCCGGCGAGATATTGATAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTGTCACATGGAATTGATTCGTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCATTCAATTTTCCAGCCATGATCCCCCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTCTGAAACCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTCGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACCAATGATGTTGTTAATTCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCGTAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAAGATAAACTTGTAGAACGTGCCAAATCTCTGAAGGTAAATTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATTGATAGTGGAGCCAGGCTATTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCAACTATCTTAACAGACGTGACGCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGGAAGTTTAGAGGAGGCCATTAGCATCGTTAATGGAAATAGGTATGGCAATGGAGCTTCCATATTCACCACATCTGGGATAGCGGCGAGGAAGTTTCAAACAGATATTGAAGCTGGACAGGTTGGGATCAACGTCCCGATTCCAGTTCCCTTACCGTTCTTCTCCTTCACCGGCTCCAAGGCATCTTTTGCTGGGGACCTCAATTTTTATGGCAAGGCTGGAGTTAATTTCTTCACTCAGATCAAAACAGTGACACAACAATGGAAAGACTCACCTGGAGGAACCGCAGTCAACCTTGCAATGCCAACCTCTCTCAAATCATAG 1614 43.93 MLQFSIRRVRKLNVLRPQIFAFGNSRFSTSAEPSSKPNPPRVPNLIGGTFVDSQSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDSYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNSICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASVDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKSLKVNSGTEPDADLGPVISKQAKERIHRLVQSGIDSGARLLLDGRNIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAGSLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSPGGTAVNLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22734620 22743143 + Tan0013018.1 Tan02g1130 743756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1130 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 9 534 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Tan02g1130 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Tan02g1130 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491(InterPro)
Tan02g1130 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491(InterPro)
Tan02g1130 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491(InterPro)
Tan02g1130 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620(InterPro)
Tan02g1130 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
Tan02g1130 537 SUPERFAMILY ALDH-like 38 519 IPR016161 GO:0016491(InterPro)
Tan02g1130 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491(InterPro)
Tan02g1130 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1130 K00140 - - csv:101204924 1008.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1130 Tan-Chr2:22734620 Tan03g1777 Tan-Chr3:73510572 8.80E-194 dispersed
Tan02g1130 Tan-Chr2:22734620 Tan02g1131 Tan-Chr2:22734620 2.00E-246 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g1303 . 51 552 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 1.8e-217 752.7
Tan02g2878 . 26 510 Aldehyde Dehydrogenase Gene Family AT3G24503 55.1 6.6e-159 558.1
Tan02g2877 . 48 532 Aldehyde Dehydrogenase Gene Family AT3G24503 55.1 6.6e-159 558.1
Tan09g2233 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 2.6e-155 546.2
Tan09g2233 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 78.4 1.4e-255 879.4
Tan02g2877 . 1 532 Aldehyde Dehydrogenase Gene Family AT3G48000 76.0 1.5e-246 849.4
Tan02g2878 . 12 510 Aldehyde Dehydrogenase Gene Family AT3G48000 78.2 6.7e-242 833.9
Tan09g1303 . 59 552 Aldehyde Dehydrogenase Gene Family AT3G48000 55.5 2.1e-166 583.2
Tan02g2877 . 1 376 Aldehyde Dehydrogenase Gene Family AT1G23800 77.0 6.8e-170 594.3
Tan09g2233 . 1 400 Aldehyde Dehydrogenase Gene Family AT1G23800 71.5 2.7e-166 582.4
Tan02g2878 . 1 354 Aldehyde Dehydrogenase Gene Family AT1G23800 78.3 3.5e-166 582.0
Tan09g1303 . 68 396 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 8.4e-104 374.8
Tan01g4041 . 3 485 Aldehyde Dehydrogenase Gene Family AT4G34240 64.6 1.5e-185 646.7
Tan01g4042 . 12 485 Aldehyde Dehydrogenase Gene Family AT4G34240 65.4 2.9e-181 632.5
Tan01g1285 . 54 449 Aldehyde Dehydrogenase Gene Family AT4G34240 51.3 1.6e-110 397.5
Tan01g4041 . 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 73.7 1.1e-180 630.2
Tan01g4042 . 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 73.7 1.1e-180 630.2
Tan01g1284 . 110 524 Aldehyde Dehydrogenase Gene Family AT1G44170 52.0 8.1e-118 421.4
Tan07g0743 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.8 5.8e-116 415.2
Tan01g1285 . 110 449 Aldehyde Dehydrogenase Gene Family AT1G44170 52.4 8.7e-96 348.2
Tan01g1284 . 50 526 Aldehyde Dehydrogenase Gene Family AT4G36250 63.9 4.7e-186 648.3
Tan07g0743 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.7 1.6e-157 553.5
Tan01g1285 . 50 451 Aldehyde Dehydrogenase Gene Family AT4G36250 62.9 5.8e-152 535.0
Tan05g0579 . 37 541 Aldehyde Dehydrogenase Gene Family AT1G79440 77.2 2.0e-235 812.4
Tan02g1130 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 8.2e-241 830.5
Tan02g1131 . 1 396 Aldehyde Dehydrogenase Gene Family AT2G14170 84.1 1.3e-198 690.3
Tan03g1777 . 196 662 Aldehyde Dehydrogenase Gene Family AT2G14170 65.7 7.8e-183 637.9
Tan09g2198 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 3.8e-252 867.8
Tan09g2198 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 1.7e-255 879.0
Tan08g0366 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.6 2.3e-268 921.8
Tan08g0365 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.5 1.1e-267 919.5
Tan05g2088 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.0 1.9e-260 895.6
Tan06g2750 . 1 589 Aldehyde Dehydrogenase Gene Family AT3G66658 77.1 2.2e-278 955.3
Tan06g2751 . 1 433 Aldehyde Dehydrogenase Gene Family AT3G66658 78.1 3.0e-203 705.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40