Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1139 ATGCCGGACTCCAATTTCCAAGACGTGATTTACGGTTCCGGAGTCATGAACAACGTGGGCCGGGATTTGGATAACATTCAGAACCGAGTTGGCGACGAAGACGACGACGTTGCCGGTGCGGAAGAGTCCATTGACAACCCTCAGATGCGTTTTGAAGACAACGGGGGGATGAGCGGCTCGGTCTCGGCGATGAACCGAGTCCAGGATGTTGTTCCTTCGCCGTATGTTTCCGGCTCTGATTACAACCCCTTGACTGGAAACGGTGGTGCCGATCAGCTTACGCTGTCATTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCTGTCAACCAACAGGGTGCCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCCTTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCGTCTAAAGCTATGGCAGATGAAGTGGGATCATCTTCAGTTTTGGCTCAAACGTTGGATCCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGTACGCATTGCGGAATCAGTTCAAAATCTACACCAATGATGCGTCGAGGACCAGCTGGCCCGAGGACTCTGTGCAATGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGCTGGCATGCAGGAACCCTCCGTGAAGGAGACTGAACAGAGCGATGGTGAAGCTAACGAAACTGATGCTGCAATTAATGTGGGTATTCTCACTTCTAATGGTGGTAAATAG 921 49.08 MPDSNFQDVIYGSGVMNNVGRDLDNIQNRVGDEDDDVAGAEESIDNPQMRFEDNGGMSGSVSAMNRVQDVVPSPYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAMADEVGSSSVLAQTLDPGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNAGMQEPSVKETEQSDGEANETDAAINVGILTSNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23489794 23495293 - Tan0003845.1 Tan02g1139 743765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1139 306 CDD ZnF_GATA 224 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g1139 306 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Tan02g1139 306 Gene3D - 221 270 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g1139 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Tan02g1139 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g1139 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Tan02g1139 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Tan02g1139 306 MobiDBLite consensus disorder prediction 267 306 - -
Tan02g1139 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g1139 306 Pfam tify domain 90 120 IPR010399 -
Tan02g1139 306 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g1139 306 SMART tify_2 86 121 IPR010399 -
Tan02g1139 306 PANTHER GATA TRANSCRIPTION FACTOR 28 38 296 IPR045280 GO:0006355(InterPro)
Tan02g1139 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1139 Tan-Chr2:23489794 Tan02g2471 Tan-Chr2:93259814 1.70E-61 dispersed
Tan02g1139 Tan-Chr2:23489794 Tan05g2421 Tan-Chr5:75394197 6.10E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26738 PF06203 CCT 1.20E-15 CL0281 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1139 - - - 0.0