Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1139 ATGCCGGACTCCAATTTCCAAGACGTGATTTACGGTTCCGGAGTCATGAACAACGTGGGCCGGGATTTGGATAACATTCAGAACCGAGTTGGCGACGAAGACGACGACGTTGCCGGTGCGGAAGAGTCCATTGACAACCCTCAGATGCGTTTTGAAGACAACGGGGGGATGAGCGGCTCGGTCTCGGCGATGAACCGAGTCCAGGATGTTGTTCCTTCGCCGTATGTTTCCGGCTCTGATTACAACCCCTTGACTGGAAACGGTGGTGCCGATCAGCTTACGCTGTCATTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCTGTCAACCAACAGGGTGCCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCCTTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCGTCTAAAGCTATGGCAGATGAAGTGGGATCATCTTCAGTTTTGGCTCAAACGTTGGATCCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGTACGCATTGCGGAATCAGTTCAAAATCTACACCAATGATGCGTCGAGGACCAGCTGGCCCGAGGACTCTGTGCAATGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAAACGCTGGCATGCAGGAACCCTCCGTGAAGGAGACTGAACAGAGCGATGGTGAAGCTAACGAAACTGATGCTGCAATTAATGTGGGTATTCTCACTTCTAATGGTGGTAAATAG 921 49.08 MPDSNFQDVIYGSGVMNNVGRDLDNIQNRVGDEDDDVAGAEESIDNPQMRFEDNGGMSGSVSAMNRVQDVVPSPYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKAMADEVGSSSVLAQTLDPGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNAGMQEPSVKETEQSDGEANETDAAINVGILTSNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23489794 23495293 - Tan0003845.1 Tan02g1139 743765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1139 306 CDD ZnF_GATA 224 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g1139 306 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Tan02g1139 306 Gene3D - 221 270 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan02g1139 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Tan02g1139 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g1139 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Tan02g1139 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Tan02g1139 306 MobiDBLite consensus disorder prediction 267 306 - -
Tan02g1139 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g1139 306 Pfam tify domain 90 120 IPR010399 -
Tan02g1139 306 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan02g1139 306 SMART tify_2 86 121 IPR010399 -
Tan02g1139 306 PANTHER GATA TRANSCRIPTION FACTOR 28 38 296 IPR045280 GO:0006355(InterPro)
Tan02g1139 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1139 Tan-Chr2:23489794 Tan02g2471 Tan-Chr2:93259814 1.70E-61 dispersed
Tan02g1139 Tan-Chr2:23489794 Tan05g2421 Tan-Chr5:75394197 6.10E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan02g2471 . 48 297 Tify Gene Family AT4G24470 53.4 2.6e-68 256.5
Tan02g1139 . 89 297 Tify Gene Family AT4G24470 54.2 1.3e-48 191.0
Tan06g0031 . 1 288 Tify Gene Family AT1G51600 60.5 1.1e-87 320.9
Tan02g1139 . 86 287 Tify Gene Family AT1G51600 57.5 4.2e-52 202.6
Tan02g2465 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2466 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2467 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2468 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2469 . 71 246 Tify Gene Family AT1G51600 58.5 1.0e-50 198.0
Tan02g2470 . 20 175 Tify Gene Family AT1G51600 57.1 8.9e-42 168.3
Tan06g0031 . 1 230 Tify Gene Family AT3G21175 56.5 1.7e-58 223.4
Tan06g2483 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2485 . 1 180 Tify Gene Family AT4G14713 53.1 8.8e-47 184.5
Tan06g2484 . 1 260 Tify Gene Family AT4G14720 52.4 1.3e-62 237.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26738 PF06203 CCT 1.20E-15 CL0281 Tan TF