Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1178 ATGCCTTCAAAGGGAAAGAAGAACTCAAAGACACTTTCTAGATTGTCAAACTCGAACCACTCTCAATCTCCATTGCCACGATTGGCAATACCTCCTGCCTCTGAAGTTTGTGAAGATGATTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATACCCTTCTTTGATTGGTAAATCTGCTTTCATTGGTACCGTTGCTAATGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGGTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACCCAAGGGGCTATCGTCTCGGTAGCACTTAGATTTGAGGGAGGTAACAATTTAAAAGGTTTTTCTCTTTCCTCATTAGCAGATGAATGTGGTAGGCACTTCGGGGTTGATTATGGAGATTCATTAACCAATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCGTCTAGTAAGGAGTTAAATGACGGAGTGCAATTATCAACAAACCTCTCGTACACCTTGGGTTGGCCTGCAATAGGCCGTGTTGTGTTTATCTCCCCTTTAAAAAATAACCTATGCAATGACCCACTAAGTGAAAATCAGAAATTGAAGAGCACAGAAGTTGAATCTCTGAAAATATACAACTGTAAGGAACTGTTCCTGGAGCTAGCTTCTTCAACCAATATATCAACAAAAGACAACTTATTCTCTTCCTCAACTATTGGTTCTAGAAAGGTTCATGGTTATGGTGAAAATGGTAATTTAGCATCCCCGAGCTCCATGCTGTCTACATCTCCTAAATGTGATGATGCAGTAGCAGTATCGAATATACTTGTAGAGAGTCCATGTGCTCATTCATTTATTAAGGAGGCCTTAGGAGATGACAGTGTTAAAAAAACTTTACAGACAATTGCTTCCAATGAGTTATATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTCCATGTGAGGGGTGGTAAAGGACCGTCGGCATATGACAACTCTTATAATTCTATGGACAATGGAAACAGCCATCATGTTCAAGATTTTGTATCAAATGAATATGTGGATCATGCTTTCAACATAGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACCAGAGTCTCAGAGACACTGCAAGAAAGAGTTCCATCAAATGTGAAACCTCAAAATCTAAATATTAGAGCTAAAGTAAAGAGTGAAGTTTGGAAATTAGGCGGCCTTTCTAAAGAATATTCAGTTTTGAAGGATATTATAATTGCCTCATCTTTAAGTAGCACCCTGTCAAGCCTTGGTTTACGAGCCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATGTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATCATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGAAGTTTTCGAGATGGCAAGCCAAAATGTACCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGGACCTGCAAGAAAAGAAGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTGATGGATGGGATCAACCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGGCCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGATTGGATATTCTACATACAATACTAAGTGAAATGGAGCATTCTCTTTCAGACCTGCAAGTTCAGCATCTAGCTATGGTTACACATGGTTTTGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGGTATCACGAGTCTAAAGTTTCTACTGATTGCCGTAGTTCTGGTAGATCTATTATAGCAGAGGAACAACATAAGTTTACCAAGGTGGATCACGAAGCCAACGTTGATGATATGATTTTGGAACCTGTTCTCTCAAAAGATGTGAGAAGTAGGTCAGGAGTTTGCTCAAACTTTGCGTCTTCATCATTCTCTAAATGTAGTTCTACATCCGAGTCTCTAACATGTATGTCCTCGAGTGAAGTGGTAGCTGATAGTGAGGATATTTTTAACTTGTCTGAAATCAAGTGTGGATTGAAGGTTGTTTTTGAAGATTTTGAGATGGCCAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAAGGAGGTCAAGGTTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGAGGCATTCAAGAGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCGCCTGGATGTAGCAAAACTCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTTCTTGCAGTAAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTATTTGCTAAGGCAAGAGCTAATGCTCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCACTCGTGGGAAGGAAAGTGATGGGATTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCAGCTACCAATCGGCCGGATAAAATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCAGTTTGTTGCTATATGTTGGGCCTCCAAGTGA 2787 40.9 MPSKGKKNSKTLSRLSNSNHSQSPLPRLAIPPASEVCEDDFLSSIEEASSKYPSLIGKSAFIGTVANAPVQSTGCKVWVSESSMVASSFTQGAIVSVALRFEGGNNLKGFSLSSLADECGRHFGVDYGDSLTNEAGNYFALARIFSSSKELNDGVQLSTNLSYTLGWPAIGRVVFISPLKNNLCNDPLSENQKLKSTEVESLKIYNCKELFLELASSTNISTKDNLFSSSTIGSRKVHGYGENGNLASPSSMLSTSPKCDDAVAVSNILVESPCAHSFIKEALGDDSVKKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFHVRGGKGPSAYDNSYNSMDNGNSHHVQDFVSNEYVDHAFNIDQLTKVFINVQSTRVSETLQERVPSNVKPQNLNIRAKVKSEVWKLGGLSKEYSVLKDIIIASSLSSTLSSLGLRATKGVLLHGPPGTGKTSLAQLCAHDAGVNLFYLNGPEIISQYHGESEQALHEVFEMASQNVPAVILIDELDAIGPARKEGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSDLQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHESKVSTDCRSSGRSIIAEEQHKFTKVDHEANVDDMILEPVLSKDVRSRSGVCSNFASSSFSKCSSTSESLTCMSSSEVVADSEDIFNLSEIKCGLKVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQKEVKVQLMEAVEWPQKHQEAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVTRGKESDGISVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDQFVAICWASK 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26366948 26389637 - Tan0013413.2 Tan02g1178 743804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1178 928 FunFam calmodulin-interacting protein 111 isoform X1 750 924 - -
Tan02g1178 928 MobiDBLite consensus disorder prediction 1 29 - -
Tan02g1178 928 Pfam AAA+ lid domain 595 634 IPR041569 -
Tan02g1178 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 922 IPR027417 -
Tan02g1178 928 CDD RecA-like_CDC48_r2-like 764 923 - -
Tan02g1178 928 SMART AAA_5 789 927 IPR003593 GO:0016887(InterPro)
Tan02g1178 928 SMART AAA_5 438 574 IPR003593 GO:0016887(InterPro)
Tan02g1178 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 627 IPR027417 -
Tan02g1178 928 Gene3D - 739 923 IPR027417 -
Tan02g1178 928 FunFam Putative vesicular transport protein (CDC48) 393 571 - -
Tan02g1178 928 PANTHER AAA-FAMILY ATPASE 66 921 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Tan02g1178 928 MobiDBLite consensus disorder prediction 1 25 - -
Tan02g1178 928 Pfam ATPase family associated with various cellular activities (AAA) 442 571 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan02g1178 928 Pfam ATPase family associated with various cellular activities (AAA) 793 922 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan02g1178 928 ProSitePatterns AAA-protein family signature. 895 913 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan02g1178 928 Gene3D - 572 697 - -
Tan02g1178 928 Gene3D - 388 571 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1178 Tan-Chr2:26366948 Tan09g0520 Tan-Chr9:47555231 0.00E+00 dispersed
Tan02g1178 Tan-Chr2:26366948 Tan02g1179 Tan-Chr2:26367129 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1178 - - - 0.0