Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1179 ATGCCTTCAAAGGGAAAGAAGAACTCAAAGACACTTTCTAGATTGTCAAACTCGAACCACTCTCAATCTCCATTGCCACGATTGGCAATACCTCCTGCCTCTGAAGTTTGTGAAGATGATTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATACCCTTCTTTGATTGGTAAATCTGCTTTCATTGGTACCGTTGCTAATGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGGTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACCCAAGGGGCTATCGTCTCGGTAGCACTTAGATTTGAGGGAGGTAACAATTTAAAAGGTTTTTCTCTTTCCTCATTAGCAGATGAATGTGGTAGGCACTTCGGGGTTGATTATGGAGATTCATTAACCAATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCGTCTAGTAAGGAGTTAAATGACGGAGTGCAATTATCAACAAACCTCTCGTACACCTTGGGTTGGCCTGCAATAGGCCGTGTTGTGTTTATCTCCCCTTTAAAAAATAACCTATGCAATGACCCACTAAGTGAAAATCAGAAATTGAAGAGCACAGAAGTTGAATCTCTGAAAATATACAACTGTAAGGAACTGTTCCTGGAGCTAGCTTCTTCAACCAATATATCAACAAAAGACAACTTATTCTCTTCCTCAACTATTGGTTCTAGAAAGGTTCATGGTTATGGTGAAAATGGTAATTTAGCATCCCCGAGCTCCATGCTGTCTACATCTCCTAAATGTGATGATGCAGTAGCAGTATCGAATATACTTGTAGAGAGTCCATGTGCTCATTCATTTATTAAGGAGGCCTTAGGAGATGACAGTGTTAAAAAAACTTTACAGACAATTGCTTCCAATGAGTTATATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTCCATGTGAGGGGTGGTAAAGGACCGTCGGCATATGACAACTCTTATAATTCTATGGACAATGGAAACAGCCATCATGTTCAAGATTTTGTATCAAATGAATATGTGGATCATGCTTTCAACATAGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACCAGAGTCTCAGAGACACTGCAAGAAAGAGTTCCATCAAATGTGAAACCTCAAAATCTAAATATTAGAGCTAAAGTAAAGAGTGAAGTTTGGAAATTAGGCGGCCTTTCTAAAGAATATTCAGTTTTGAAGGATATTATAATTGCCTCATCTTTAAGTAGCACCCTGTCAAGCCTTGGTTTACGAGCCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATGTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATCATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGAAGTTTTCGAGATGGCAAGCCAAAATGTACCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGGACCTGCAAGAAAAGAAGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTGATGGATGGGATCAACCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGGCCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGATTGGATATTCTACATACAATACTAAGTGAAATGGAGCATTCTCTTTCAGACCTGCAAGTTCAGCATCTAGCTATGGTTACACATGGTTTTGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGGTATCACGAGTCTAAAGTTTCTACTGATTGCCGTAGTTCTGGTAGATCTATTATAGCAGAGGAACAACATAAGTTTACCAAGGTGGATCACGAAGCCAACGTTGATGATATGATTTTGGAACCTGTTCTCTCAAAAGATGTGAGAAGTAGGTCAGGAGTTTGCTCAAACTTTGCGTCTTCATCATTCTCTAAATGTAGTTCTACATCCGAGTCTCTAACATGTATGTCCTCGAGTGAAGTGGTAGCTGATAGTGAGGATATTTTTAACTTGTCTGAAATCAAGTGTGGATTGAAGGTTGTTTTTGAAGATTTTGAGATGGCCAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAAGGAGGTCAAGGTTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGAGGCATTCAAGAGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCGCCTGGATGTAGCAAAACTCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTTCTTGCAGTAAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTATTTGCTAAGGCAAGAGCTAATGCTCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCACTCGTGGGAAGGAAAGTGATGGGATTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCAGCTACCAATCGGCCGGATAAAATTGATCCAGCCCTTCTAAGGCCAGGTATTACCCCATACAGAAACTTCTATACACTCATACACCACAAATCTGCTACAACATCTGCACTGAACAAATGCATTCTGCCCAGTTTTTTCTTTTCTTTTTGTTTTTTGTTGCTATATGTTGGGCCTCCAAGTGAATCTGAACGAGAAGAGATATTTAGTATCCATTTGTGCAAAATTCCTTGCAGCCCAAATGTCAGCACAAGGAAGTTGGCTTCTCTTGCTCAAGGCTGTACAGGGGCTGACATATCATTAATCTGCAGAGAAGCAGCTTTATTTGCCCTCGAGGAGAACCTTGAGGTTTCAAAAATAAATATGCAACATTTAGAAACTGCAGTTAGACACGTGAAGCCATCTGCAACTGAACCCTATCAAGAATTATCATCTAGGTTTCAAAGGTTTGTGTGTTCTAGCTCACAAGGAGCTAATGTAATCTCTTCCCCTTCTATTTTCACCCCACATAGATCTCTTCCCCTTCTATTTTCTACCCACTAG 3237 40.75 MPSKGKKNSKTLSRLSNSNHSQSPLPRLAIPPASEVCEDDFLSSIEEASSKYPSLIGKSAFIGTVANAPVQSTGCKVWVSESSMVASSFTQGAIVSVALRFEGGNNLKGFSLSSLADECGRHFGVDYGDSLTNEAGNYFALARIFSSSKELNDGVQLSTNLSYTLGWPAIGRVVFISPLKNNLCNDPLSENQKLKSTEVESLKIYNCKELFLELASSTNISTKDNLFSSSTIGSRKVHGYGENGNLASPSSMLSTSPKCDDAVAVSNILVESPCAHSFIKEALGDDSVKKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFHVRGGKGPSAYDNSYNSMDNGNSHHVQDFVSNEYVDHAFNIDQLTKVFINVQSTRVSETLQERVPSNVKPQNLNIRAKVKSEVWKLGGLSKEYSVLKDIIIASSLSSTLSSLGLRATKGVLLHGPPGTGKTSLAQLCAHDAGVNLFYLNGPEIISQYHGESEQALHEVFEMASQNVPAVILIDELDAIGPARKEGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSDLQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHESKVSTDCRSSGRSIIAEEQHKFTKVDHEANVDDMILEPVLSKDVRSRSGVCSNFASSSFSKCSSTSESLTCMSSSEVVADSEDIFNLSEIKCGLKVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQKEVKVQLMEAVEWPQKHQEAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVTRGKESDGISVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGITPYRNFYTLIHHKSATTSALNKCILPSFFFSFCFLLLYVGPPSESEREEIFSIHLCKIPCSPNVSTRKLASLAQGCTGADISLICREAALFALEENLEVSKINMQHLETAVRHVKPSATEPYQELSSRFQRFVCSSSQGANVISSPSIFTPHRSLPLLFSTH 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26367129 26389637 - Tan0013413.1 Tan02g1179 743805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1179 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 627 IPR027417 -
Tan02g1179 1078 Pfam ATPase family associated with various cellular activities (AAA) 793 915 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan02g1179 1078 Pfam ATPase family associated with various cellular activities (AAA) 442 571 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan02g1179 1078 CDD RecA-like_CDC48_r2-like 764 915 - -
Tan02g1179 1078 FunFam Putative vesicular transport protein (CDC48) 393 571 - -
Tan02g1179 1078 MobiDBLite consensus disorder prediction 1 29 - -
Tan02g1179 1078 Gene3D - 734 937 IPR027417 -
Tan02g1179 1078 Gene3D - 388 571 IPR027417 -
Tan02g1179 1078 FunFam calmodulin-interacting protein 111 isoform X1 750 920 - -
Tan02g1179 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 1040 IPR027417 -
Tan02g1179 1078 Gene3D - 572 691 - -
Tan02g1179 1078 PANTHER AAA-FAMILY ATPASE 67 1045 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Tan02g1179 1078 Pfam AAA+ lid domain 980 1024 IPR041569 -
Tan02g1179 1078 Pfam AAA+ lid domain 595 634 IPR041569 -
Tan02g1179 1078 Gene3D - 958 1041 - -
Tan02g1179 1078 SMART AAA_5 789 927 IPR003593 GO:0016887(InterPro)
Tan02g1179 1078 SMART AAA_5 438 574 IPR003593 GO:0016887(InterPro)
Tan02g1179 1078 MobiDBLite consensus disorder prediction 1 25 - -
Tan02g1179 1078 ProSitePatterns AAA-protein family signature. 895 913 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1179 Tan-Chr2:26367129 Tan09g0520 Tan-Chr9:47555231 0.00E+00 dispersed
Tan02g1178 Tan-Chr2:26366948 Tan02g1179 Tan-Chr2:26367129 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1179 - - - 0.0