Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1195 ATGGACATCTCCTTGGCGGAAATGGATGATCCTCCTACCAGTCCCGTCAAGGCCTTGGCTACGTTTCTAATTCGACGCCACTCCGATCAGCTCCGTTCCATTGCTCATTCCCCTGATCCTAAGCTCCATTACCCTCTATTCATCGAATTTGCAGAGCTGATGGACGACGACCCACCTCTTGCTCGCTTCGTCTTCTCCCATCCAATCGAGTACTTGCGTATTTTTGACGAGGCAGCTGTTTGGGCTCATAAGATCATTTTGGGTGACTCGAAAGGTTGCGTGGATGGAATTAAGAAAGATTTCATCCATGTTCGCATTAATGTCACCGGCTCCCCGCTGGAATGGCCTGAGACTTTTCCCAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACGGTAATCAGATCTGGGGCAATCAAGATGTATGAAGGGGAGAGGTGGTACATGTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGCCCCTCTCAGAGGGCAAAACCATGTGAAGGTAAAAGTTTTGAGTGCTTGGAAGGTTCTATAGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGCGTGGGGTCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGACGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCTCCAGACCTCAAAGATGTACGGTGTGACCTTGATCCAATGGTAATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGGCCGAGGTTGACATCCCTGATGAAATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCTATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTCACTGTAAAACTTGCAGTGGCTTTAACACTCATCGGAGGTGTACAACATGTGGATATATCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTCGCTGCCAAATTGAGCAACCGAGCCGTTATTACCACTGGATTAGGAAGCACTAGCGCTGGACTAACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGCTGGAGGCTGGGGCACTTGTACTTGCCGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGATAGAGCCACGATCCATGAAGCAATGGAGCAACAAACTATAAGTGTCGCAAAGGCTGGTCTTGTAACAACTCTCAGTACCAGAACGATAGTATTTGGTGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCTCTATCTGTAAATACAACACTCTCCGGTCCCTTATTGAGCAGATTTGATATCGTCCTTGTACTTTTAGATACAAAAAATCCCGAATGGGATGCAGTTGTTTCATCTCATATTCTATCCGAGTGCGAACAAGAAAAGGGAAAGTGTAACAATGACCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATTCAATTCGTGAAAGGATACTTCAGACCAGTCCTGACTAAGGAGGCTGAAAATATTATCTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACGGTACGCATGCTTGAAAGTTTGATACGTCTAGCACAAGCACATGCACGGCTTATGTTTAGAAATGAGGTTACCCAGCTTGATGCCATTACAGCTATTTTGTGTGTTGAATCATCCATGACGATCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACTGAGAACCCAGATGAGGAATGTATCCTTCCTTGCTAA 1944 44.29 MDISLAEMDDPPTSPVKALATFLIRRHSDQLRSIAHSPDPKLHYPLFIEFAELMDDDPPLARFVFSHPIEYLRIFDEAAVWAHKIILGDSKGCVDGIKKDFIHVRINVTGSPLEWPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYMCRKCKHKFPVYPELETRNSIQLPSFCPSQRAKPCEGKSFECLEGSIVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMVIANHVRRTNELKAEVDIPDEIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSECEQEKGKCNNDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAENIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTQLDAITAILCVESSMTISALVDSVGNALHSNFTENPDEECILPC 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28327923 28422589 - Tan0014664.2 Tan02g1195 743821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1195 647 SMART mcm 118 619 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan02g1195 647 Pfam MCM P-loop domain 312 515 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan02g1195 647 CDD MCM9 313 617 - -
Tan02g1195 647 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 16 621 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Tan02g1195 647 FunFam Probable DNA helicase MCM9 288 622 - -
Tan02g1195 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 622 IPR027417 -
Tan02g1195 647 SUPERFAMILY Nucleic acid-binding proteins 43 260 IPR012340 -
Tan02g1195 647 SMART AAA_5 352 501 IPR003593 GO:0016887(InterPro)
Tan02g1195 647 Gene3D - 124 254 IPR012340 -
Tan02g1195 647 ProSiteProfiles MCM family domain profile. 310 513 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan02g1195 647 Gene3D - 286 622 IPR027417 -
Tan02g1195 647 Pfam MCM AAA-lid domain 536 617 IPR041562 -
Tan02g1195 647 Gene3D - 149 205 - -
Tan02g1195 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 487 495 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan02g1195 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 409 423 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan02g1195 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 450 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan02g1195 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 460 472 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan02g1195 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 351 366 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan02g1195 647 Pfam MCM OB domain 124 254 IPR033762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1195 Tan-Chr2:28327923 Tan10g1476 Tan-Chr10:21353966 6.20E-69 dispersed
Tan02g1194 Tan-Chr2:28312939 Tan02g1195 Tan-Chr2:28327923 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1195 K10738 - csv:101205171 1182.93