Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1223 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTCTAGATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTACCCTAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTAGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTCAGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGAAGACACTTACCAAGCAACCTCAAGATTTCACTCATTTCCAACATCACCAAAAATGGGCAATGGTCTTCTGGTGAATAAAAAAGATGCTGGTCTATCCAATTTTTACTTTCCGCATTCCTCTTCCAATAATGTTGAAGCTTGGTCATCAGTTCCTTCCATGGAATATGTATCACAAGTTCAGAAAGATGGACTTGGAAGTAGTGATGGTGGTACTGGTGGGATTGGTTCTCAGAAGACACTCAGCTCTGCCTCATGGGAAGAGATCCTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCAGGTTTTAAACCCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAACTCCTGGCAAGCTTTTAGCCGGTAATAGTGCTGTTAAAGAGGACTTTGGGAGCTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGACATAGATGGCAGGTTAACTGAGCAGAAATCGCATAATGCAACTTTTGGAAGTGGTCATGAGATGTTTTGTGCTCATCCTGGCATAGAGAATGAGGAGATTTTGTCCAACAACCTCGAATTACAGTTCAATGAAGGAGAATCATATTCTGCAATGAGGTTGAATTCTGAAAATGATATGTCTAAAGAAGGTGCCATCAACTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCACGGTGGGTGTCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACGGTAGAATGTGATGATATTGTGGATGATTCATCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACCGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTACTGGTCATGCATGTTTGGGGAAGTCGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTGTGCTGTCATGCACCGCCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTGGCAGGCTCTGCTCAAGATGTAGATGTTACCGAAGTATATAATGCTGGTGCTACAGAAGAATTAGATTTGCATTTGCGGTTTGAGAGGTTACTGTCCCCTAGGTCTTCAGATCCTCCAAATAACCTCTCTGAAGGTGCCTTGGAGAAACGGAACTTAATCAGAAAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGAGAAGAGCCAAATTCTCAGAATGATCAAATTCAGCATCAAAGCAAGGATTCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATTCGTAAAGTTATTGAAGATGGCAAAGGTCCTAATATATTGGATGATAAGGGACAGGGAGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGACCAATTGTAGCTGCAGGAGTGAGTATAAACTTTAGAGACGTTAATGGATGGACTGCTGTTCATTGGGCAGCATTATATGGCAGGGAGTTGACAGTTGGAACCCTTATAACTTTGGGTGCTGCTCCTGGATTGCCGTCAGATCCATCTCCAGAAATTCCTTTGGGCATAATGGCTGCAGACCTTGCTTCTATAAATGGACACAAAGGGATCTCTGGTTTTCTAGCAGAGTCATCATTGACCAGCTTTGTCTCATCTGTATCGATGGCAGATACCAAAGAAGATGGTGTGCTAGACGCTTCAAAAAGGAAAGCTGTGTATACTGTTTCAGAACGAAAGGCAACCCCGATAAATGATGGTTTTATGCCTGGTGATTTGTCTTTGAAGGATTCATTGACTGCTGTCTGCAATGCCACTCAAGCTGCTGACCGTATACATCTGATGTTTAGAGTGAAGTCATTTCAGAGGAATCAATTATCAGAGTGTGGTCCTGATGAATTTGGATCCTCAGATGATAGTGCTATTTCATTTGTCACTGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTGAGGGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCAGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCCGATACAGTTGCTAAGGATCCACCCTCTGTGATGGAACCGCCTAAAGAGGATGATTATGATTTTCTGAAGGAAGGTAGGAGGCAGACTGAGGAAAGATTTCAAAAAGCACTCACCAGAGTTAAGTCCATGGCTCAGTATCCTGAGGGACGAGACCAATATCGTAGGCTACTTACTGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATGGCTATTACTAGTTCTTCAGAAGAGATAATAGAAGCCGATGACATGATTGATATCGACACACTGCTGGACGATGACGCTTTGATGTCTATGACATTTGATTGA 3285 42.19 MADRGSYGLAPRLDIDQLLIEAKHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPQSSSYSSSHNQAASENADSPSPTSTLTSFCEDADTEDTYQATSRFHSFPTSPKMGNGLLVNKKDAGLSNFYFPHSSSNNVEAWSSVPSMEYVSQVQKDGLGSSDGGTGGIGSQKTLSSASWEEILQQCTTGFQTVPSQVLNPSIEPLSSGIVLGQENSTPGKLLAGNSAVKEDFGSSLTMTSNWQVPFEDNTLSFSKGHVDQFPDLYSVYDIDGRLTEQKSHNATFGSGHEMFCAHPGIENEEILSNNLELQFNEGESYSAMRLNSENDMSKEGAINYSLTLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECDDIVDDSSLSPSLSEDQLFSITDFSPKWTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLAGSAQDVDVTEVYNAGATEELDLHLRFERLLSPRSSDPPNNLSEGALEKRNLIRKLISIKEEEDCYGEEPNSQNDQIQHQSKDSLFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGVIHLAAALGYDWAIRPIVAAGVSINFRDVNGWTAVHWAALYGRELTVGTLITLGAAPGLPSDPSPEIPLGIMAADLASINGHKGISGFLAESSLTSFVSSVSMADTKEDGVLDASKRKAVYTVSERKATPINDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRNQLSECGPDEFGSSDDSAISFVTARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRPDTVAKDPPSVMEPPKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAITSSSEEIIEADDMIDIDTLLDDDALMSMTFD 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30872441 30897221 - Tan0014675.1 Tan02g1223 743849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1223 1094 CDD IPT 508 594 - -
Tan02g1223 1094 SMART iq_5 940 962 IPR000048 GO:0005515(InterPro)
Tan02g1223 1094 SMART iq_5 917 939 IPR000048 GO:0005515(InterPro)
Tan02g1223 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 918 968 IPR027417 -
Tan02g1223 1094 ProSiteProfiles IQ motif profile. 941 965 - -
Tan02g1223 1094 Pfam IPT/TIG domain 508 581 IPR002909 -
Tan02g1223 1094 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Tan02g1223 1094 Pfam IQ calmodulin-binding motif 943 962 IPR000048 GO:0005515(InterPro)
Tan02g1223 1094 Pfam IQ calmodulin-binding motif 919 938 IPR000048 GO:0005515(InterPro)
Tan02g1223 1094 Gene3D Immunoglobulins 502 597 IPR013783 -
Tan02g1223 1094 ProSiteProfiles IQ motif profile. 918 947 - -
Tan02g1223 1094 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1057 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan02g1223 1094 MobiDBLite consensus disorder prediction 147 189 - -
Tan02g1223 1094 Gene3D - 673 821 IPR036770 -
Tan02g1223 1094 FunFam Calmodulin-binding transcription activator 2 917 965 - -
Tan02g1223 1094 SUPERFAMILY E set domains 509 593 IPR014756 -
Tan02g1223 1094 SUPERFAMILY Ankyrin repeat 691 803 IPR036770 -
Tan02g1223 1094 Gene3D - 918 965 - -
Tan02g1223 1094 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Tan02g1223 1094 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Tan02g1223 1094 FunFam Calmodulin-binding transcription activator 2 502 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1411 Tan-Chr1:14012036 Tan02g1223 Tan-Chr2:30872441 1.60E-199 dispersed
Tan01g1412 Tan-Chr1:14012036 Tan02g1223 Tan-Chr2:30872441 3.30E-200 dispersed
Tan02g1223 Tan-Chr2:30872441 Tan10g1109 Tan-Chr10:10702276 7.40E-139 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26741 PF03859 CG-1 3.00E-50 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1223 K21596 - csv:101203707 1835.46