Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1223 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTCTAGATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTACCCTAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTAGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTCAGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGAAGACACTTACCAAGCAACCTCAAGATTTCACTCATTTCCAACATCACCAAAAATGGGCAATGGTCTTCTGGTGAATAAAAAAGATGCTGGTCTATCCAATTTTTACTTTCCGCATTCCTCTTCCAATAATGTTGAAGCTTGGTCATCAGTTCCTTCCATGGAATATGTATCACAAGTTCAGAAAGATGGACTTGGAAGTAGTGATGGTGGTACTGGTGGGATTGGTTCTCAGAAGACACTCAGCTCTGCCTCATGGGAAGAGATCCTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCAGGTTTTAAACCCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAACTCCTGGCAAGCTTTTAGCCGGTAATAGTGCTGTTAAAGAGGACTTTGGGAGCTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGACATAGATGGCAGGTTAACTGAGCAGAAATCGCATAATGCAACTTTTGGAAGTGGTCATGAGATGTTTTGTGCTCATCCTGGCATAGAGAATGAGGAGATTTTGTCCAACAACCTCGAATTACAGTTCAATGAAGGAGAATCATATTCTGCAATGAGGTTGAATTCTGAAAATGATATGTCTAAAGAAGGTGCCATCAACTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCACGGTGGGTGTCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACGGTAGAATGTGATGATATTGTGGATGATTCATCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACCGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTACTGGTCATGCATGTTTGGGGAAGTCGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTGTGCTGTCATGCACCGCCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTGGCAGGCTCTGCTCAAGATGTAGATGTTACCGAAGTATATAATGCTGGTGCTACAGAAGAATTAGATTTGCATTTGCGGTTTGAGAGGTTACTGTCCCCTAGGTCTTCAGATCCTCCAAATAACCTCTCTGAAGGTGCCTTGGAGAAACGGAACTTAATCAGAAAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGAGAAGAGCCAAATTCTCAGAATGATCAAATTCAGCATCAAAGCAAGGATTCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATTCGTAAAGTTATTGAAGATGGCAAAGGTCCTAATATATTGGATGATAAGGGACAGGGAGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGACCAATTGTAGCTGCAGGAGTGAGTATAAACTTTAGAGACGTTAATGGATGGACTGCTGTTCATTGGGCAGCATTATATGGCAGGGAGTTGACAGTTGGAACCCTTATAACTTTGGGTGCTGCTCCTGGATTGCCGTCAGATCCATCTCCAGAAATTCCTTTGGGCATAATGGCTGCAGACCTTGCTTCTATAAATGGACACAAAGGGATCTCTGGTTTTCTAGCAGAGTCATCATTGACCAGCTTTGTCTCATCTGTATCGATGGCAGATACCAAAGAAGATGGTGTGCTAGACGCTTCAAAAAGGAAAGCTGTGTATACTGTTTCAGAACGAAAGGCAACCCCGATAAATGATGGTTTTATGCCTGGTGATTTGTCTTTGAAGGATTCATTGACTGCTGTCTGCAATGCCACTCAAGCTGCTGACCGTATACATCTGATGTTTAGAGTGAAGTCATTTCAGAGGAATCAATTATCAGAGTGTGGTCCTGATGAATTTGGATCCTCAGATGATAGTGCTATTTCATTTGTCACTGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTGAGGGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCAGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCCGATACAGTTGCTAAGGATCCACCCTCTGTGATGGAACCGCCTAAAGAGGATGATTATGATTTTCTGAAGGAAGGTAGGAGGCAGACTGAGGAAAGATTTCAAAAAGCACTCACCAGAGTTAAGTCCATGGCTCAGTATCCTGAGGGACGAGACCAATATCGTAGGCTACTTACTGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATGGCTATTACTAGTTCTTCAGAAGAGATAATAGAAGCCGATGACATGATTGATATCGACACACTGCTGGACGATGACGCTTTGATGTCTATGACATTTGATTGA 3285 42.19 MADRGSYGLAPRLDIDQLLIEAKHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPQSSSYSSSHNQAASENADSPSPTSTLTSFCEDADTEDTYQATSRFHSFPTSPKMGNGLLVNKKDAGLSNFYFPHSSSNNVEAWSSVPSMEYVSQVQKDGLGSSDGGTGGIGSQKTLSSASWEEILQQCTTGFQTVPSQVLNPSIEPLSSGIVLGQENSTPGKLLAGNSAVKEDFGSSLTMTSNWQVPFEDNTLSFSKGHVDQFPDLYSVYDIDGRLTEQKSHNATFGSGHEMFCAHPGIENEEILSNNLELQFNEGESYSAMRLNSENDMSKEGAINYSLTLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECDDIVDDSSLSPSLSEDQLFSITDFSPKWTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLAGSAQDVDVTEVYNAGATEELDLHLRFERLLSPRSSDPPNNLSEGALEKRNLIRKLISIKEEEDCYGEEPNSQNDQIQHQSKDSLFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGVIHLAAALGYDWAIRPIVAAGVSINFRDVNGWTAVHWAALYGRELTVGTLITLGAAPGLPSDPSPEIPLGIMAADLASINGHKGISGFLAESSLTSFVSSVSMADTKEDGVLDASKRKAVYTVSERKATPINDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRNQLSECGPDEFGSSDDSAISFVTARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRPDTVAKDPPSVMEPPKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAITSSSEEIIEADDMIDIDTLLDDDALMSMTFD 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30872441 30897221 - Tan0014675.1 Tan02g1223 743849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1223 1094 CDD IPT 508 594 - -
Tan02g1223 1094 SMART iq_5 940 962 IPR000048 GO:0005515(InterPro)
Tan02g1223 1094 SMART iq_5 917 939 IPR000048 GO:0005515(InterPro)
Tan02g1223 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 918 968 IPR027417 -
Tan02g1223 1094 ProSiteProfiles IQ motif profile. 941 965 - -
Tan02g1223 1094 Pfam IPT/TIG domain 508 581 IPR002909 -
Tan02g1223 1094 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Tan02g1223 1094 Pfam IQ calmodulin-binding motif 943 962 IPR000048 GO:0005515(InterPro)
Tan02g1223 1094 Pfam IQ calmodulin-binding motif 919 938 IPR000048 GO:0005515(InterPro)
Tan02g1223 1094 Gene3D Immunoglobulins 502 597 IPR013783 -
Tan02g1223 1094 ProSiteProfiles IQ motif profile. 918 947 - -
Tan02g1223 1094 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1057 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan02g1223 1094 MobiDBLite consensus disorder prediction 147 189 - -
Tan02g1223 1094 Gene3D - 673 821 IPR036770 -
Tan02g1223 1094 FunFam Calmodulin-binding transcription activator 2 917 965 - -
Tan02g1223 1094 SUPERFAMILY E set domains 509 593 IPR014756 -
Tan02g1223 1094 SUPERFAMILY Ankyrin repeat 691 803 IPR036770 -
Tan02g1223 1094 Gene3D - 918 965 - -
Tan02g1223 1094 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Tan02g1223 1094 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Tan02g1223 1094 FunFam Calmodulin-binding transcription activator 2 502 597 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1223 K21596 - - csv:101203707 1835.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1411 Tan-Chr1:14012036 Tan02g1223 Tan-Chr2:30872441 1.60E-199 dispersed
Tan01g1412 Tan-Chr1:14012036 Tan02g1223 Tan-Chr2:30872441 3.30E-200 dispersed
Tan02g1223 Tan-Chr2:30872441 Tan10g1109 Tan-Chr10:10702276 7.40E-139 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1223 . 1 1094 CAMTA Transcription Factor Family AT5G64220 53.2 1.2e-276 950.3
Tan06g2739 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2740 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2741 . 1 830 CAMTA Transcription Factor Family AT3G16940 54.8 1.5e-245 846.7
Tan06g2739 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2740 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2741 . 1 552 CAMTA Transcription Factor Family AT4G16150 50.7 5.8e-161 565.8
Tan02g1223 . 1 1094 CAMTA Transcription Factor Family AT5G64220 53.2 1.2e-276 950.3
Tan06g2739 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2740 . 11 629 CAMTA Transcription Factor Family AT4G16150 53.5 9.5e-196 681.4
Tan06g2741 . 1 552 CAMTA Transcription Factor Family AT4G16150 50.7 5.8e-161 565.8
Tan06g2739 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2740 . 34 907 CAMTA Transcription Factor Family AT3G16940 56.1 3.1e-267 918.7
Tan06g2741 . 1 830 CAMTA Transcription Factor Family AT3G16940 54.8 1.5e-245 846.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26741 PF03859 CG-1 3.00E-50 No_clan Tan TF