Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1249 ATGGCTGCAACTTCTGGTGCTCTGCTTAATGGCTTGGGCTCACCCTTCCTCCGTGGAGGTAGCAGAAGCCACACCTTGCTACCCGGAGCAAGAAGCGCTGTCAATGTCGTCGGCTCTCGCAAGCTTGTCATTGTCGCCGCTGCTCAGCCCAAGAAGTCCTGGCTCCCTGGCGTTAGGGGCGGCGGCAACTTCATCGACCCGGAATGGCTCGATGGCTCACTTCCAGGCGACTACGGCTTCGACCCACTGGGGTTGGGAAAGGACCCAGCATTTCTGAAGTGGTACAGAGAGGCAGAGCTAATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCATCGGCCAGGCCTGGAGTGGGATCCCATGGTTCGAAGCCGGAGCCGATCCGTCTGCAGTCGCTCCATTCTCCTTCGGAACACTGCTCGGAACCCAGCTTCTGCTAATGGGATGGGTCGAGAGCAAGCGATGGGTCGATTTCTTCAACCCAGAGTCTCAATCCGTCGAATGGGCGACGCCATGGTCGAGGACGGCAGAGAACTTCGCAAACGCAACCGGAGAACAGGGGTACCCCGGAGGAAAATTCTTCGATCCGTTGGGATTTGCAGGAAGTCTAAAGGATGGAGTTTACATTCCAGACGCGGAGAAGTTGGAGAGATTGAAGTTGGCGGAGATCAAGCATGCTAGGATCGCCATGTTAGCGATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACGCCGTTGGGTGCTCTTGGATTGTAA 768 56.64 MAATSGALLNGLGSPFLRGGSRSHTLLPGARSAVNVVGSRKLVIVAAAQPKKSWLPGVRGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGIPWFEAGADPSAVAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGSLKDGVYIPDAEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32299137 32301348 - Tan0004365.1 Tan02g1249 743875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1249 255 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 50 253 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Tan02g1249 255 SUPERFAMILY Chlorophyll a-b binding protein 66 255 - -
Tan02g1249 255 Gene3D Chlorophyll a/b binding protein domain 67 254 - -
Tan02g1249 255 FunFam Chlorophyll a-b binding protein, chloroplastic 67 254 - -
Tan02g1249 255 Pfam Chlorophyll A-B binding protein 67 243 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1249 Tan-Chr2:32299137 Tan09g1055 Tan-Chr9:62798005 6.10E-36 dispersed
Tan02g1249 Tan-Chr2:32299137 Tan09g2110 Tan-Chr9:71467726 2.20E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1249 K08917 - csv:101204705 482.641