Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1294 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCGGTGCAGGACAACTACCGTATTCTAATCCTTACCAAACAGCTCCAATGGTGGCTTCTGGAGCTCCTGCTATTTCGATTCCATCGACTCAGCAACCATCCAGTTTCTCTAATTCTCCGCACCAGCTTGCCTATCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAGCAGCAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCCGATGAAGACGTCCGAATGATTTCGGCTGAAGCACCAGTAATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCGATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGGGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGCTTCTATTCCCGTAGTTGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACTGCTCAACCGCCCCGACCACAGATGCCATTCATGCCATGGCCACATACTCAATCTCAGCAGCAGCAGCAAACTCAGCAGCAAAGTGATGCATAG 801 47.44 MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTAPMVASGAPAISIPSTQQPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQPPRPQMPFMPWPHTQSQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36322198 36324996 - Tan0010097.1 Tan02g1294 743920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1294 266 MobiDBLite consensus disorder prediction 234 266 - -
Tan02g1294 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982(InterPro)
Tan02g1294 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 252 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan02g1294 266 Pfam Core histone H2A/H2B/H3/H4 54 166 IPR007125 GO:0003677(InterPro)
Tan02g1294 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982(InterPro)
Tan02g1294 266 MobiDBLite consensus disorder prediction 248 266 - -
Tan02g1294 266 MobiDBLite consensus disorder prediction 1 76 - -
Tan02g1294 266 MobiDBLite consensus disorder prediction 1 19 - -
Tan02g1294 266 MobiDBLite consensus disorder prediction 43 76 - -
Tan02g1294 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1294 K08066 - - csv:101213813 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1169 Tan-Chr1:11468024 Tan02g1294 Tan-Chr2:36322198 5.80E-24 dispersed
Tan02g1294 Tan-Chr2:36322198 Tan09g0222 Tan-Chr9:13756473 1.60E-66 dispersed
Tan02g1294 Tan-Chr2:36322198 Tan02g1295 Tan-Chr2:36322198 9.90E-138 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2376 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.3e-88 323.6
Tan09g0222 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 7.8e-54 208.0
Tan09g0223 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 7.8e-54 208.0
Tan02g1294 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.4 3.0e-53 206.1
Tan02g1295 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.4 3.0e-53 206.1
Tan09g0222 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 3.1e-55 212.6
Tan09g0223 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 3.1e-55 212.6
Tan02g1294 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 2.8e-48 189.5
Tan02g1295 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 2.8e-48 189.5
Tan09g2376 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Tan09g0222 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.4 4.2e-62 235.3
Tan09g0223 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.4 4.2e-62 235.3
Tan02g1294 . 82 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.7
Tan02g1295 . 82 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.7
Tan09g2376 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.6e-51 199.5
Tan09g2376 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.2e-38 155.2
Tan09g2376 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.0e-80 297.4
Tan09g0222 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 8.6e-51 198.0
Tan09g0223 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 8.6e-51 198.0
Tan02g1294 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 4.3e-50 195.7
Tan02g1295 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 4.3e-50 195.7
Tan02g1294 . 57 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.4 9.3e-64 240.7
Tan02g1295 . 57 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.4 9.3e-64 240.7
Tan09g0222 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.8 2.6e-50 196.1
Tan09g0223 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.8 2.6e-50 196.1
Tan09g2376 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.8e-50 194.9
Tan02g2212 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.5 4.4e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26744 PF00125 Histone 1.50E-17 CL0012 Tan TF