Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1295 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCGGTGCAGGACAACTACCGTATTCTAATCCTTACCAAACAGCTCCAATGGTGGCTTCTGGAGCTCCTGCTATTTCGATTCCATCGACTCAGCAACCATCCAGTTTCTCTAATTCTCCGCACCAGCTTGCCTATCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAGCAGCAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCCGATGAAGACGTCCGAATGATTTCGGCTGAAGCACCAGTAATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCGATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGGGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGCTTCTATTCCCGTAGTTGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACTGCTCAACCGCCCCGACCACAGATGCCATTCATGCCATGGCCACATACTCAATCTCAGCAGCAGCAGCAAACTCAGCAGCAAAGTGATGCATAG 801 47.44 MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTAPMVASGAPAISIPSTQQPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQPPRPQMPFMPWPHTQSQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36322198 36324996 - Tan0010097.2 Tan02g1295 743921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1295 266 MobiDBLite consensus disorder prediction 234 266 - -
Tan02g1295 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982(InterPro)
Tan02g1295 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 252 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan02g1295 266 Pfam Core histone H2A/H2B/H3/H4 54 166 IPR007125 GO:0003677(InterPro)
Tan02g1295 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982(InterPro)
Tan02g1295 266 MobiDBLite consensus disorder prediction 248 266 - -
Tan02g1295 266 MobiDBLite consensus disorder prediction 1 76 - -
Tan02g1295 266 MobiDBLite consensus disorder prediction 1 19 - -
Tan02g1295 266 MobiDBLite consensus disorder prediction 43 76 - -
Tan02g1295 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1295 Tan-Chr2:36322198 Tan09g0222 Tan-Chr9:13756473 1.60E-66 dispersed
Tan02g1294 Tan-Chr2:36322198 Tan02g1295 Tan-Chr2:36322198 9.90E-138 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26745 PF00125 Histone 1.50E-17 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1295 K08066 - csv:101213813 412.149