Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g1295 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCGGTGCAGGACAACTACCGTATTCTAATCCTTACCAAACAGCTCCAATGGTGGCTTCTGGAGCTCCTGCTATTTCGATTCCATCGACTCAGCAACCATCCAGTTTCTCTAATTCTCCGCACCAGCTTGCCTATCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAGCAGCAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCCGATGAAGACGTCCGAATGATTTCGGCTGAAGCACCAGTAATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCGATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGGGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGCTTCTATTCCCGTAGTTGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACTGCTCAACCGCCCCGACCACAGATGCCATTCATGCCATGGCCACATACTCAATCTCAGCAGCAGCAGCAAACTCAGCAGCAAAGTGATGCATAG | 801 | 47.44 | MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTAPMVASGAPAISIPSTQQPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQPPRPQMPFMPWPHTQSQQQQQTQQQSDA | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 36322198 | 36324996 | - | Tan0010097.2 | Tan02g1295 | 743921 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g1295 | 266 | MobiDBLite | consensus disorder prediction | 234 | 266 | - | - | |
Tan02g1295 | 266 | SUPERFAMILY | Histone-fold | 59 | 175 | IPR009072 | GO:0046982(InterPro) | |
Tan02g1295 | 266 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 83 | 252 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Tan02g1295 | 266 | Pfam | Core histone H2A/H2B/H3/H4 | 54 | 166 | IPR007125 | GO:0003677(InterPro) | |
Tan02g1295 | 266 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982(InterPro) | |
Tan02g1295 | 266 | MobiDBLite | consensus disorder prediction | 248 | 266 | - | - | |
Tan02g1295 | 266 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Tan02g1295 | 266 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Tan02g1295 | 266 | MobiDBLite | consensus disorder prediction | 43 | 76 | - | - | |
Tan02g1295 | 266 | FunFam | Nuclear transcription factor Y subunit gamma | 69 | 181 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g1295 | Tan-Chr2:36322198 | Tan09g0222 | Tan-Chr9:13756473 | 1.60E-66 | dispersed | |
Tan02g1294 | Tan-Chr2:36322198 | Tan02g1295 | Tan-Chr2:36322198 | 9.90E-138 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26745 | PF00125 | Histone | 1.50E-17 | CL0012 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g1295 | K08066 | - | csv:101213813 | 412.149 |