Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1306 ATGGACAACATTACCGCCCAGTTAAAGAGGGGAATATCTCGCCAGTTCTCGACTGGGTCTCTCCGGCGGACTCTTAGCAGGCAATTCACAAGGCAGTCCTCTTTAGACCCGAGACGAAACAATTTGAGATTCAGCTTCGGCCGTCAGTCTTCTCTTGACCCCATTCGCCGCTGTCCCGGTGACGAGAATGAGCTCTCGGTGCCTGAGAATTTGGACTCCACGATGCAGCTTCTGTTCATGGCTTGCCGTGGCGATGTTAGAGGCGTTGAGGACTTACTCAATGATGGCACCGATGTCAACAGCATCGACTTGGATGGTCGCACTGCCTTGCATATTGCTGCCTGCGAGGGCCATGCCGACGTTGTTAAGCTATTTACCGCTGCTGCCGATGCTAAATATTATGGAAATACAGATATTTACAACATTCTCAAGGCCCGTGGAGCCAAAGTTCCGAAATTTAGGAAGACTCCAATGACCGTTGCAAATCCTAGGGAAGTTCCAGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGACGGTATATCAAAGGGGACATATCAAGTTGCCAAATGGAATGGAACAAAAGTGGCTGTCAAAATTCTTGATAAAGATTGTTATTGTAATCCGGATTCTATAAATGCATTCAAACATGAGTTGACCTTATTGGAAAAGGTCCGACATCCCAACGTAGTTCAGTTTGTTGGTGCCGTTACCCAGAATTTGCCGATGATGATCGTTTCGGAATACCATCCAAAGGGTGATTTAGGTTTCTATCTTCAAAAGAAAGGTCGTCTATCTCCATCTAAGGCTTTGAGATTCGCCCTCGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCAGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCTTGATAAGATTGTCGAAAATGTCTCCTGACAAAGCAAAACTAGCTCAGCCAGTGATTATTGACTCTTCAAACTTGTACTTGGCACCCGAGATTTACAATGATGAAATATTTGACAGAAGCGTTGATGCATTTTCGTTCGGTCTCATTCTATACGAGATGGTGGAGGGCATTCAGCCATTCCATCCCAAGTCTCCAGAAGAGGTTTCCAAAGCTATTTGTATAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTGGATAAAATAGTTTCCAACTGCTCAAAACAAGGATGGTGGAAAGACACATTTAAACTTCCCTGGTATGTTCTTGATTCTCATTTGATAACGTTCTCGTTTCTTTCTTTTCTCTATTCCACATTTCCCATTTCTTCTTTTTTGTTTCCTAAGAAAATAAAAAGTTTATTATCTACTTCATCTATTACTTATAATGAATTAAACTATATTGCGCTCTCTACTTCTATCACCGGTATTCCTCCATTTCCTTTCTCTTATGCTTTATTTCTCCCCTTTTCTCAACGCCTTGAGCGCTTACGGCTATGTGATCTTATCGATTTTATTCGTGGCGCTGATTATGATTTGTCATTTCTTCTGGAGTTTATTGGATTGAATTATACTTTGATAATGACTTCCAATGCAATTTTAAGACGGAAGAGGTTTATTTCTCATTATGAGAACTCCACCATACGCACAATTCAAAGTTTACAGTGGACTGGGCATTTTGGTCAGAACGCTGGCTCACTTGGTTCTGTTTCCAATAATGATGATCCCTCTGCTGTTTCTAATCATGGCATAGGAAATAGAATCAGACCTCCAGCCAAGAAAGGTGAATTGCTTAATTTTACAGGAGTTCAGAAGTTTAGGCAAATATGCTATAGCATTCCAATATCAAATCGTGGGAATTTCAATGTTTATACTCCTTGTGGAATTGGATTGATGTCACGATCCGTCCGGAATGCATCCACTTCAGTGGCTAAACAACCTGATTCGACCAGTGATGAAGAGGAGAACAATGAATTGGTTGCTAAGAAGAGGAAAGAAGCATCTCCAGAGGAATGTGATCAAGCTGTGGAAGGTCTGAGCACTGCCAAAGCCAAAGCAAAGGCAAGACGATTACAAGAGTCTCAAAGCATAGTTACTTACACTTTGCAAAGATTATGGGCAATCGTCACAGGGATAGGTCCTTCCTTAAGGGCTGTTGCTTCAATGAGCAGGGAGGACTGGGCAAAGAAGCTTGTTTACTGGAAAGAAGAATTTGTATCAACCTTACAACATTACTGGTTGGGTTTCAAGCTTTTGTGGGCTGATGTGAGGATTAGTTCAAGATTGCTTCTAAAACTTGCTGGTGGGAAGAATCTCTCAAGGCGAGAGAGACAACAGCTAACCCGGACCACAGCTGATATCTTTAGACTGGTTCCTTTTGCTGTTTTTATCATAGTTCCATTCATGGAATTTTTGCTGCCAGTCTTTCTTAAATTATTTCCCAACATGTTACCATCAACTTTTCAAGACAAGATGAAAGAACAGGAAGCATTGAAAAGGAAGCTTAATGCAAGAATAGAGTATGCTAAGTTCCTTCAAGACACGGCCAAGGAAATGGCTAAAGAAGTTCAAAACTCGAGAAGCGGAGAAATTAAGAAGACAGCTGAAGATCTTGATGAGTTTTTGACCAGGTTGAGGACTGGTGCTCGTGTATCTAATGACGAAATTTTAGGATTCGCCAAGCTGTTCAATGATGAACTCACGTTAGATAATATCAGCAGGCCTCGATTAGTAAATATGTGCAAGTACATGGGCATTAGCCCTTTTGGGACCGATGCATATTTACGATATATGCTCCGTAAAAGATTGCGGTGGATAAAGGAAGATGATAAATTAATACAAGCAGAGGGGGTGGAGTCCCTTTCTGAATCCGAGCTTCGTGAAGATTGTCGGGAGAGAGGCATGCTTGGCTTGCTCTCAGTAGAAGAAATGCGACAACAGCTTCGTGATTGGTTGGATCTGTCGCTAAACCATTCTGTCCCATCTTCACTTTTGATCCTTTCGAGAGCGTTCACAGTATCTGGAAAGTTGAAACCAGAGGAAGCTGTCCTGGCTACATTGTCTTCTCTGCCAGATGAGGTTGTAGACACCGTTGGTGTTACTGCTCTGCCATCTGAAGATTCCATATCAGAAAGGAGGAGAAAGTTAGAATTCCTTGAGATGCAGGAGGAAATGATCAAGGAGGAGGAGGAGAAAGAGGAAGAGGAACAAGCTAAAATGAAGGAATCCAAATCCAGCCAAGAAGATATAGCTCTGAAGGAGATAGTCAATCCGATGGCAAGAGAAGCTATAGAACAAGCTCGAGCAAAAGCTTTAGAAAAACAAGAGCACCTCTGTGAAGTCAGTCGTGCATTGGCTGTTTTAGCTTCTGCCTCTTCTGTCAGTAGAGAGCGGGAAGAATTCCTGCAGCTTGTGAATAAGGAGATAGAACTGTATAATAGCATGGTAGGAAGAGAAGGCACAGATGGTGAAAAGCAGGTCAGGGAGGCATATAGAGCTGCTCGAGAAGAAAGTGATCAATCTACTGAAGCGTCAGAAGGAGATGACATATCATCAGCACTTGTTGAAAGAGTTGATACTATGCTCCAAAAACTAGAAAAGGAAATTGATGATGTGGATGCTAAAATTGGTGATCGTTGGCAATTACTAGACAGGGATTTTGACGGTAAAGTAACTCCTGAAGAAGTCGCAGCTGCTGCTATGTACTTAAAAGATACATTAGGAAAGGAAGGCATCCAAGAGCTTATCAGCAGTCTTTCCAAAGATAAAGATGGTAAAATTCTTGTGGAAGACATTGTGAGATTGGGCAGTCAGGCAGAAGACACCAACTCTTGA 3945 42.0 MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPGDENELSVPENLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHADVVKLFTAAADAKYYGNTDIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGTYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGFYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVIIDSSNLYLAPEIYNDEIFDRSVDAFSFGLILYEMVEGIQPFHPKSPEEVSKAICIEGKRPPFKIKSKSYPPDLKELIEECWDPEPVVRPTFSEIIVRLDKIVSNCSKQGWWKDTFKLPWYVLDSHLITFSFLSFLYSTFPISSFLFPKKIKSLLSTSSITYNELNYIALSTSITGIPPFPFSYALFLPFSQRLERLRLCDLIDFIRGADYDLSFLLEFIGLNYTLIMTSNAILRRKRFISHYENSTIRTIQSLQWTGHFGQNAGSLGSVSNNDDPSAVSNHGIGNRIRPPAKKGELLNFTGVQKFRQICYSIPISNRGNFNVYTPCGIGLMSRSVRNASTSVAKQPDSTSDEEENNELVAKKRKEASPEECDQAVEGLSTAKAKAKARRLQESQSIVTYTLQRLWAIVTGIGPSLRAVASMSREDWAKKLVYWKEEFVSTLQHYWLGFKLLWADVRISSRLLLKLAGGKNLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRKLNARIEYAKFLQDTAKEMAKEVQNSRSGEIKKTAEDLDEFLTRLRTGARVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRKRLRWIKEDDKLIQAEGVESLSESELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLKPEEAVLATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEEMIKEEEEKEEEEQAKMKESKSSQEDIALKEIVNPMAREAIEQARAKALEKQEHLCEVSRALAVLASASSVSREREEFLQLVNKEIELYNSMVGREGTDGEKQVREAYRAAREESDQSTEASEGDDISSALVERVDTMLQKLEKEIDDVDAKIGDRWQLLDRDFDGKVTPEEVAAAAMYLKDTLGKEGIQELISSLSKDKDGKILVEDIVRLGSQAEDTNS 1314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38237883 38271929 - Tan0002820.1 Tan02g1306 743932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1306 1314 Coils Coil 1079 1116 - -
Tan02g1306 1314 Gene3D Phosphorylase Kinase; domain 1 172 253 - -
Tan02g1306 1314 MobiDBLite consensus disorder prediction 1102 1116 - -
Tan02g1306 1314 MobiDBLite consensus disorder prediction 685 709 - -
Tan02g1306 1314 ProSiteProfiles EF-hand calcium-binding domain profile. 1241 1276 IPR002048 GO:0005509(InterPro)
Tan02g1306 1314 FunFam Os01g0748600 protein 164 455 - -
Tan02g1306 1314 Coils Coil 1225 1245 - -
Tan02g1306 1314 PANTHER LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN 671 1203 IPR044202 GO:0005743(InterPro)|GO:0006875(PANTHER)
Tan02g1306 1314 Gene3D - 1165 1314 - -
Tan02g1306 1314 SUPERFAMILY EF-hand 879 1304 IPR011992 -
Tan02g1306 1314 CDD EFh 1245 1305 IPR002048 GO:0005509(InterPro)
Tan02g1306 1314 SUPERFAMILY Ankyrin repeat 76 161 IPR036770 -
Tan02g1306 1314 Pfam Ankyrin repeats (3 copies) 78 137 IPR002110 GO:0005515(InterPro)
Tan02g1306 1314 SMART ANK_2a 73 101 IPR002110 GO:0005515(InterPro)
Tan02g1306 1314 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Tan02g1306 1314 MobiDBLite consensus disorder prediction 677 709 - -
Tan02g1306 1314 Pfam Protein tyrosine and serine/threonine kinase 184 435 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan02g1306 1314 FunFam serine/threonine-protein kinase STY46-like 171 254 - -
Tan02g1306 1314 Pfam LETM1-like, RBD 809 1042 IPR033122 GO:0043022(InterPro)
Tan02g1306 1314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan02g1306 1314 MobiDBLite consensus disorder prediction 1096 1116 - -
Tan02g1306 1314 Gene3D - 68 161 IPR036770 -
Tan02g1306 1314 Gene3D Transferase(Phosphotransferase) domain 1 254 453 - -
Tan02g1306 1314 SMART serkin_6 178 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g1306 1314 ProSiteProfiles Letm1 ribosome-binding (RBD) domain profile. 870 1073 IPR033122 GO:0043022(InterPro)
Tan02g1306 1314 ProSiteProfiles Ankyrin repeat region circular profile. 105 125 - -
Tan02g1306 1314 CDD STKc_MAP3K-like 184 436 - -
Tan02g1306 1314 ProSiteProfiles Protein kinase domain profile. 174 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan02g1306 1314 ProSiteProfiles Ankyrin repeat profile. 105 125 IPR002110 GO:0005515(InterPro)
Tan02g1306 1314 SUPERFAMILY Protein kinase-like (PK-like) 187 436 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1306 Tan-Chr2:38237883 Tan08g0960 Tan-Chr8:14733938 9.20E-261 dispersed
Tan11g1160 Tan-Chr11:9334514 Tan02g1306 Tan-Chr2:38237883 6.10E-09 dispersed
Tan02g1306 Tan-Chr2:38237883 Tan05g2543 Tan-Chr5:76764397 1.20E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67213 PF07766 LETM1 2.50E-106 No_clan Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1306 K17800 - vvi:100257815 1050.04