Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1421 ATGGCGACCTCAAAACCCCAAAGGTCACCTGAGGAGGTCGAAGACATTATCCTTCGTAAAGTCTTCCTTGTTTCTCTCACCGATTCTTCCGATTCCGACCCTCGAATCGTCTATCTCGAGCAAACCGCCGCCGAACTCCTTAGCGAAGGCAAGCAATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATAATCGATCGTCTATCGGGTCATTTCCCCTCTGCCGACCCCCCTTTTCAGTACCTAATCGCCTGCTACCGTCGAGCACACGACGAGAGTAAGAAAATTGCTTCCATGAAGGATAGGAATTTGCGCTCTGAGATTGAAATAGCGCTCAAGCAAGCCAAGAAGTTGACGGTTTCGTATTGTAGGATTGATTTGGGGAATCCTGAATTGTTTTCGACTGGGGATTTGGGTACTAACTCCAGCACTTCGCCTTTGCTTCCATTGATTTTCTCCGAGCTTGGTAGCTCGATGGATGGATTTGGGACTAGTACCAGTGCTGGCGGAGGCTTTCAGTGCCCTCCGGGCTTCTTGGAGGAGTTTCTTCGGGATTCGGATTTTGATACATTAGACCCCATATTGAAGGGGTTGTATGAGGATTTAAGGGGCAATGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCACTTAGGTTTCTGGTTAGTTTTCCTGTTGGGGCTAAATCTTTGGTGAATCATCCATGGTGGATTCCCACTGGTAAATATTCCAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAGCCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCATCTACTCGTAGACCATCTGATTTACTGTCTTCATTCACTACAATTAAAACAGTCATGAATAACTTATACGATGGCCTTGCGGAAGTTCTTCTCTCTCTTCTTAAGAACACAGAGATCCGTGAAAATGTTCTTGAGTATCTTGCAGAGGTGATGAATAGAAACTCATCAAGGGCTCATATACAGGTCGATCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTTAATCTAAGTGCCATCATGCTACGACTCTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCAAAATATGTATGTTATGGAAACCGCTTGGAGTTAAGAGGTTTAACTGCTCTACATGCATCGTCGGAAGAAGTTACTGAGTGGATTAATAATGGTACTCAGTTGAAAACTGATGACCCTGGGCAGTTTAGCGACAGTGAAAGTCGCTTGCTGCAATCCCAAGAAGCTTCCAGTTCTGGTAGTAATGCTACTACTGGATCTTCTGGACCTTCTACTGTGAAGGCAAGATCGACTGGTGATAAAACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTAAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTCAAAGCCATGCAGGGACAGGGACCTGCTCCACAGCTTGAAATGGATATAGCTCGCCTCGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTGAGGGACGGGACTCTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAAGTTGCCCAATGGAATTTGCATCCATGCCAGAGCATTTTGTAGAAGATGCAATGGAATTGCTTATATTTGCCTCCCGAATTCCTAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCGGAATATATCAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTTTGAACTGCTGGATTCCTCGTAGGAGCGGTTCATCTGTAACAGCAACATTATTTGAAGGGCACCAACTATCACTCGAGTATCTTGTTAGGAATCTATTAAAGCTCTATGTGGACATTGAGTTCACTGGTTCACATACACAGTTTTACGACAAGTTCAACATTCGTCATAATATTGCCGAACTTCTCGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAAGGCGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTGCTTGATGAAAGCCTTAATAAGATTCTTGAACTTAAAGAGCTTGAAGCGGAAATGTCAAATACCGCAGAATGGGAGCGGCGACCCGCTCAAGAGAGGCAGGAGAGAACCAGGCTGTTTCACTCTCAAGAAAATATCATTCGGATTGATATGAAATTAGCAAATGAGGATGTGAGTATGCTGGCATTTACATCGGAGCAAATTACAGCTCCTTTCCTACTTCCAGAGATGGTCGAAAGGGTGGCCAGCATGCTTAATTATTTCCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTACGAATTCCGTCCAAAAGAGTTGCTTAAACAGATTGTTCACATATATGTTCATCTGGCAAGAGGCGATGCACACAATATTTTCCCAGCTGCCATTTCAAAGGACGGAAGATCATACAACGAGCAGTTGTTTAATGCTGGGGCAGTTGTACTCAGACGAATTGGAGAAGATGGTAGGATAATACAGGAATTTATTGATCTTGGTAACAAAGCAAAGGACGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTGGGAGATATACCGGACGAATTCCTTGACCCGATCCAATACACTTTAATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACAGTCGACAGACCCGTCATTCAAAGACATCTCCTTAGCGACAGCACTGACCCGTTCAACCGGTCTCATCTGACTTCGGACATGCTAATACCGAACGATGAACTGAAAGCAAGAATAGAAGAATTCATCAGGTCACAAGAATTGAAGAAGCAACTGGATGGAGGGGTTGCGATGCCGAGCAGCAAGGCGACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTGA 3132 43.84 MATSKPQRSPEEVEDIILRKVFLVSLTDSSDSDPRIVYLEQTAAELLSEGKQLRISRDVMERIIIDRLSGHFPSADPPFQYLIACYRRAHDESKKIASMKDRNLRSEIEIALKQAKKLTVSYCRIDLGNPELFSTGDLGTNSSTSPLLPLIFSELGSSMDGFGTSTSAGGGFQCPPGFLEEFLRDSDFDTLDPILKGLYEDLRGNVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTEIRENVLEYLAEVMNRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTEWINNGTQLKTDDPGQFSDSESRLLQSQEASSSGSNATTGSSGPSTVKARSTGDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVVWLVGLVGGFKMPLPSSCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDAHNIFPAAISKDGRSYNEQLFNAGAVVLRRIGEDGRIIQEFIDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNDELKARIEEFIRSQELKKQLDGGVAMPSSKATIQPTSGEMLID 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53644877 53660304 - Tan0005576.1 Tan02g1421 744047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1421 1043 FunFam Ubiquitin conjugation factor e4 a 943 1021 - -
Tan02g1421 1043 Coils Coil 522 549 - -
Tan02g1421 1043 CDD RING-Ubox_UBE4A 946 1014 - -
Tan02g1421 1043 SMART Ubox_2 947 1010 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g1421 1043 Pfam Ubiquitin elongating factor core 259 927 IPR019474 GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro)
Tan02g1421 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 943 1021 IPR013083 -
Tan02g1421 1043 ProSiteProfiles U-box domain profile. 943 1017 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g1421 1043 Pfam U-box domain 944 1014 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g1421 1043 MobiDBLite consensus disorder prediction 1021 1043 - -
Tan02g1421 1043 MobiDBLite consensus disorder prediction 421 464 - -
Tan02g1421 1043 PANTHER UBIQUITINATION FACTOR E4 8 1019 IPR045132 GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(PANTHER)|GO:0034450(InterPro)|GO:0036503(InterPro)
Tan02g1421 1043 SUPERFAMILY RING/U-box 936 1014 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1421 K10597 - csv:101211398 1915.2