Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g1421 | ATGGCGACCTCAAAACCCCAAAGGTCACCTGAGGAGGTCGAAGACATTATCCTTCGTAAAGTCTTCCTTGTTTCTCTCACCGATTCTTCCGATTCCGACCCTCGAATCGTCTATCTCGAGCAAACCGCCGCCGAACTCCTTAGCGAAGGCAAGCAATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATAATCGATCGTCTATCGGGTCATTTCCCCTCTGCCGACCCCCCTTTTCAGTACCTAATCGCCTGCTACCGTCGAGCACACGACGAGAGTAAGAAAATTGCTTCCATGAAGGATAGGAATTTGCGCTCTGAGATTGAAATAGCGCTCAAGCAAGCCAAGAAGTTGACGGTTTCGTATTGTAGGATTGATTTGGGGAATCCTGAATTGTTTTCGACTGGGGATTTGGGTACTAACTCCAGCACTTCGCCTTTGCTTCCATTGATTTTCTCCGAGCTTGGTAGCTCGATGGATGGATTTGGGACTAGTACCAGTGCTGGCGGAGGCTTTCAGTGCCCTCCGGGCTTCTTGGAGGAGTTTCTTCGGGATTCGGATTTTGATACATTAGACCCCATATTGAAGGGGTTGTATGAGGATTTAAGGGGCAATGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCACTTAGGTTTCTGGTTAGTTTTCCTGTTGGGGCTAAATCTTTGGTGAATCATCCATGGTGGATTCCCACTGGTAAATATTCCAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAGCCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCATCTACTCGTAGACCATCTGATTTACTGTCTTCATTCACTACAATTAAAACAGTCATGAATAACTTATACGATGGCCTTGCGGAAGTTCTTCTCTCTCTTCTTAAGAACACAGAGATCCGTGAAAATGTTCTTGAGTATCTTGCAGAGGTGATGAATAGAAACTCATCAAGGGCTCATATACAGGTCGATCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTTAATCTAAGTGCCATCATGCTACGACTCTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCAAAATATGTATGTTATGGAAACCGCTTGGAGTTAAGAGGTTTAACTGCTCTACATGCATCGTCGGAAGAAGTTACTGAGTGGATTAATAATGGTACTCAGTTGAAAACTGATGACCCTGGGCAGTTTAGCGACAGTGAAAGTCGCTTGCTGCAATCCCAAGAAGCTTCCAGTTCTGGTAGTAATGCTACTACTGGATCTTCTGGACCTTCTACTGTGAAGGCAAGATCGACTGGTGATAAAACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTAAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTCAAAGCCATGCAGGGACAGGGACCTGCTCCACAGCTTGAAATGGATATAGCTCGCCTCGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTGAGGGACGGGACTCTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAAGTTGCCCAATGGAATTTGCATCCATGCCAGAGCATTTTGTAGAAGATGCAATGGAATTGCTTATATTTGCCTCCCGAATTCCTAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCGGAATATATCAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTTTGAACTGCTGGATTCCTCGTAGGAGCGGTTCATCTGTAACAGCAACATTATTTGAAGGGCACCAACTATCACTCGAGTATCTTGTTAGGAATCTATTAAAGCTCTATGTGGACATTGAGTTCACTGGTTCACATACACAGTTTTACGACAAGTTCAACATTCGTCATAATATTGCCGAACTTCTCGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAAGGCGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTGCTTGATGAAAGCCTTAATAAGATTCTTGAACTTAAAGAGCTTGAAGCGGAAATGTCAAATACCGCAGAATGGGAGCGGCGACCCGCTCAAGAGAGGCAGGAGAGAACCAGGCTGTTTCACTCTCAAGAAAATATCATTCGGATTGATATGAAATTAGCAAATGAGGATGTGAGTATGCTGGCATTTACATCGGAGCAAATTACAGCTCCTTTCCTACTTCCAGAGATGGTCGAAAGGGTGGCCAGCATGCTTAATTATTTCCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTACGAATTCCGTCCAAAAGAGTTGCTTAAACAGATTGTTCACATATATGTTCATCTGGCAAGAGGCGATGCACACAATATTTTCCCAGCTGCCATTTCAAAGGACGGAAGATCATACAACGAGCAGTTGTTTAATGCTGGGGCAGTTGTACTCAGACGAATTGGAGAAGATGGTAGGATAATACAGGAATTTATTGATCTTGGTAACAAAGCAAAGGACGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTGGGAGATATACCGGACGAATTCCTTGACCCGATCCAATACACTTTAATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACAGTCGACAGACCCGTCATTCAAAGACATCTCCTTAGCGACAGCACTGACCCGTTCAACCGGTCTCATCTGACTTCGGACATGCTAATACCGAACGATGAACTGAAAGCAAGAATAGAAGAATTCATCAGGTCACAAGAATTGAAGAAGCAACTGGATGGAGGGGTTGCGATGCCGAGCAGCAAGGCGACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTGA | 3132 | 43.84 | MATSKPQRSPEEVEDIILRKVFLVSLTDSSDSDPRIVYLEQTAAELLSEGKQLRISRDVMERIIIDRLSGHFPSADPPFQYLIACYRRAHDESKKIASMKDRNLRSEIEIALKQAKKLTVSYCRIDLGNPELFSTGDLGTNSSTSPLLPLIFSELGSSMDGFGTSTSAGGGFQCPPGFLEEFLRDSDFDTLDPILKGLYEDLRGNVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTEIRENVLEYLAEVMNRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTEWINNGTQLKTDDPGQFSDSESRLLQSQEASSSGSNATTGSSGPSTVKARSTGDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVVWLVGLVGGFKMPLPSSCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDAHNIFPAAISKDGRSYNEQLFNAGAVVLRRIGEDGRIIQEFIDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNDELKARIEEFIRSQELKKQLDGGVAMPSSKATIQPTSGEMLID | 1043 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 53644877 | 53660304 | - | Tan0005576.1 | Tan02g1421 | 744047 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g1421 | 1043 | FunFam | Ubiquitin conjugation factor e4 a | 943 | 1021 | - | - | |
Tan02g1421 | 1043 | Coils | Coil | 522 | 549 | - | - | |
Tan02g1421 | 1043 | CDD | RING-Ubox_UBE4A | 946 | 1014 | - | - | |
Tan02g1421 | 1043 | SMART | Ubox_2 | 947 | 1010 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan02g1421 | 1043 | Pfam | Ubiquitin elongating factor core | 259 | 927 | IPR019474 | GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro) | |
Tan02g1421 | 1043 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 943 | 1021 | IPR013083 | - | |
Tan02g1421 | 1043 | ProSiteProfiles | U-box domain profile. | 943 | 1017 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan02g1421 | 1043 | Pfam | U-box domain | 944 | 1014 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan02g1421 | 1043 | MobiDBLite | consensus disorder prediction | 1021 | 1043 | - | - | |
Tan02g1421 | 1043 | MobiDBLite | consensus disorder prediction | 421 | 464 | - | - | |
Tan02g1421 | 1043 | PANTHER | UBIQUITINATION FACTOR E4 | 8 | 1019 | IPR045132 | GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(PANTHER)|GO:0034450(InterPro)|GO:0036503(InterPro) | |
Tan02g1421 | 1043 | SUPERFAMILY | RING/U-box | 936 | 1014 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g1421 | K10597 | - | csv:101211398 | 1915.2 |