Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1428 ATGGAGCTTCTAAGAAGAAGGGTCGCCGGCAGTGGGTTGCTGCAGGCGGCGGCGGCGTTGGCGGTGGTGCTGCTGGCTGCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTAGCAACATGGGATGGACGACCAATGTCAACTACACTATCTGGGCTCAGGGGAAGCACTTCTACTATGATGACTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGATTATGAGACTTGCAATTCTGATCATCCACTCCACAATTACACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATATAACCAGGCCCTATTACTTCATAAGTGGAAAGGGCTTTTGTTATGGAGGCATGAAGCTCGCTATTCACGTCGAACACCTACCTCCACCGCCCTCGAGTTCGCCCTTGAACCAGAAGAGTGCTTCTCCAAGATCGACCCACATTGGCCACACCCCGTTTCTTTTAACCGCTGTTTTCTCCATCGCTGCTCTTCAGCTAGCTTTCACCCACATCTGGTAA 543 51.2 MELLRRRVAGSGLLQAAAALAVVLLAAVPEVSATRWTVGSNMGWTTNVNYTIWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYETCNSDHPLHNYTTGAGRDVVHLNITRPYYFISGKGFCYGGMKLAIHVEHLPPPPSSSPLNQKSASPRSTHIGHTPFLLTAVFSIAALQLAFTHIW 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54276178 54277860 + Tan0003273.1 Tan02g1428 744054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1428 180 ProSiteProfiles Phytocyanin domain profile. 34 134 IPR003245 GO:0009055(InterPro)
Tan02g1428 180 Gene3D - 32 135 IPR008972 -
Tan02g1428 180 FunFam Lamin-like protein 32 135 - -
Tan02g1428 180 Pfam Plastocyanin-like domain 44 126 IPR003245 GO:0009055(InterPro)
Tan02g1428 180 PANTHER BLUE COPPER PROTEIN 24 138 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Tan02g1428 180 SUPERFAMILY Cupredoxins 33 132 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1428 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1428 Tan-Chr2:54276178 Tan09g0929 Tan-Chr9:61293572 1.50E-28 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4518 . 11 132 Phytocyanin Superfamily AT3G20570 57.7 5.8e-37 151.8
Tan01g4385 . 2 159 Phytocyanin Superfamily AT5G53870 50.6 6.0e-37 152.5
Tan05g2299 . 22 156 Phytocyanin Superfamily AT1G48940 54.8 2.7e-38 156.0
Tan02g1428 . 17 129 Phytocyanin Superfamily AT3G01070 64.0 4.8e-37 151.8
Tan02g1428 . 17 180 Phytocyanin Superfamily AT5G15350 52.7 1.2e-46 183.7
Tan05g2299 . 20 132 Phytocyanin Superfamily AT3G18590 65.2 1.1e-37 154.1
Tan01g4385 . 2 159 Phytocyanin Superfamily AT5G53870 50.6 6.0e-37 152.5
Tan05g2299 . 20 132 Phytocyanin Superfamily AT3G18590 65.2 1.1e-37 154.1
Tan05g2299 . 22 156 Phytocyanin Superfamily AT1G48940 54.8 2.7e-38 156.0
Tan01g4518 . 11 132 Phytocyanin Superfamily AT3G20570 57.7 5.8e-37 151.8
Tan02g1428 . 17 129 Phytocyanin Superfamily AT3G01070 64.0 4.8e-37 151.8
Tan02g1428 . 17 180 Phytocyanin Superfamily AT5G15350 52.7 1.2e-46 183.7
Tan07g0828 . 19 220 Phytocyanin Superfamily AT1G08500 54.4 2.6e-54 209.5
Tan09g0929 . 30 134 Phytocyanin Superfamily AT2G27035 59.0 1.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38