Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1430 ATGGCTTCTCCGTCTCCTTCCCTAATGGGGATTAAAGTTTCAAAGCCGAGTACTACTCAAGGAGGGAAGGTGGAACAGCTAAGTCTGCAACACCACCTAATAAATTATCTATCAAAAAGCTTTTACATACGAAACTTAGTTTCAAAGAAAAGGAGACGAATGCTTGTTGGTGGGTATGATCTTGACATGTCTTATATTACAGATCATGTTCTGGCAATGTCATTCCCTGCAGAACGTATGCGTGCTATGTATCGTAATCCCCTTTGGCAGGTTAAATCAATCTATAATCTCTGCATTGAACAAACCTATGATCCATCTCATTTTCATGGTCGTGTTGAGTTGTTTCCTTTCGATGATAATCATGTTCCTCCTCTACACATGATCAAACTTTTCTGTCAAAATGTCTCCTCCTGGCTATCCTCCCACCCAAAGAATATTGCAGTTGTACATTGCATGGCTGGAAAAGGTCGAACCGGACTCATGGTATGTGCCTACTTGGTGTACTGTGGTATGTCTGTCGATGATGCTCTTCAGCTCTATGCCCAAAGGCGGACAACCAATAATGAAGGAGTATCAATTCCAAGCCAACGACGGTATGTGGGCTACTGGGCAAAGTGCCTTTCCTTTCCCAAGGGGGCATATCCTGAGGTCAAGTTGCCCCAACGCTGTACCAGAGAGTTGCAGAGAATTCGTCTTTATGATACACTTAACACAGAATCAATTTTCTTTGTCGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTAACGAGGAGTCGTTGCAGACAATTTAAGAGAGGTTATGAAAGAAGTAACAGTCCACGTTACTTTATATCTTTTGTGGAAGACGATACCGAAGGGAACAAGCCAGAACTGGAACCCCATCTTGTTGTTCAAATGGATACCGAGTGTTCAGCACTGTACCACAAAACCTGCCTTGACTATAATTTTGAGAAGCCTCTCCCACTAACTGGAGATGTTCGCATCATATTCTACGCAAAGATGTTAGGAGGGCGTCTCTTCTATGCTTGCTTCAACACTGCTTTCATTCAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTCGGTCCTGCGAATGCGAAACACTCATTTTCGACTTCATCATATGAAAAAGATCCTAGTGATCATGACATGTCTTAA 1242 42.91 MASPSPSLMGIKVSKPSTTQGGKVEQLSLQHHLINYLSKSFYIRNLVSKKRRRMLVGGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSIYNLCIEQTYDPSHFHGRVELFPFDDNHVPPLHMIKLFCQNVSSWLSSHPKNIAVVHCMAGKGRTGLMVCAYLVYCGMSVDDALQLYAQRRTTNNEGVSIPSQRRYVGYWAKCLSFPKGAYPEVKLPQRCTRELQRIRLYDTLNTESIFFVVSELQEVPSQLYRPSMELTRSRCRQFKRGYERSNSPRYFISFVEDDTEGNKPELEPHLVVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMLGGRLFYACFNTAFIQNSLLQLRLQDLDKVGKKGRSICGPSFCLELVFGPANAKHSFSTSSYEKDPSDHDMS 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54750054 54753769 - Tan0008459.1 Tan02g1430 744056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1430 413 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 294 391 IPR035892 -
Tan02g1430 413 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 41 395 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
Tan02g1430 413 Gene3D Protein tyrosine phosphatase superfamily 39 209 IPR029021 -
Tan02g1430 413 Pfam C2 domain of PTEN tumour-suppressor protein 313 390 IPR014020 -
Tan02g1430 413 SMART PTEN_C2_2 220 391 IPR014020 -
Tan02g1430 413 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
Tan02g1430 413 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311(InterPro)
Tan02g1430 413 Gene3D - 262 394 - -
Tan02g1430 413 MobiDBLite consensus disorder prediction 1 22 - -
Tan02g1430 413 ProSiteProfiles Phosphatase tensin-type domain profile. 52 210 IPR029023 -
Tan02g1430 413 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 59 205 IPR029021 -
Tan02g1430 413 ProSiteProfiles C2 tensin-type domain profile. 238 392 IPR014020 -
Tan02g1430 413 Pfam Swiss Army Knife protein, DSP-PTPase phosphatase domain 90 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1430 Tan-Chr2:54750054 Tan03g1590 Tan-Chr3:72130673 1.70E-35 dispersed
Tan02g1430 Tan-Chr2:54750054 Tan02g0941 Tan-Chr2:11624401 1.30E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1430 K01110 - csv:101212127 716.072