Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1456 ATGCTCAAAACACCGGGCTCTTACATTGATCTCGTCAACATTAATGTAAATCTAAAACTAGTGCCAAAACCGAAAACTCAGATCACCTCGTTTGTATCAAATACAAAACAGGTCGCATCCACAACGTATCCAGGATTAGTGGACAGATTAACCAAGTCAGCACATTTTATACCAGGGAAACCCACCTATTCTACAGATAAGTGGGCGCAGCTTTACTTGGAAGAGATAATCCGTTTGCATGGGATTCCAGCCAAGATTATTTCAGACAGGGATCCACGTTTCACCTCCAATTTCTGGAGGAGTTTACAGAGAGCGTTAGGTTCGCAGTTGAACTTTAGTATGACTTTTCATCCACGAGCGGATGGGCGCATTTTAACGCTTAAACGAGATATTAGAAGATATGTTGCGAGCTTGCACCTTAGACTTCCGAGTGGTTTGGGACACTCATTTGCATTTAATGGACCGATCCGCGCGACCAGCCCTCCGACACCTACGCGCGGCGCAGCCTGCCCGAGAGAACGCGACGCCCACCGCTTCTTCACGTCGTTTGCGCCGGCAGATCAACGAGCGGAGTTTACTCGTTCCACCACCACGCGAAGTCCCAGCCGATCGTGCGCTGCGTGGACAGTTCGCGAGGCGTGCGCGAAAATGGACGTTGATGTGCTCTTTTTGTTGGCCTTTCTGTCCCTCCTCTCTTCTGTCGAAGCAGGCGGCGGCGAATGGACGAATGCTCACGCCACCTTCTATGGCGGCAGTGATGCTTCTGGGACAATGGGTGGAGCTTGTGGGTACGGGAATCTTTACAGTCAAGGATACGGCACCAACACTGCGGCTGTTAGCAGTGCCCTTTTCAAAGATGGCTTGAGCTGCGGATCTTGCTATGAGATCAAATGCGTGGGTGACCCTAAATGGTGCCTTCCAGGCTCCATTTTGGTTACTGCCACCAACTTCTGTCCACCCAACAATGCCCTTCCCAACAATGCCGGTGGCTGGTGTAACTTTCCTCTTCACCATTTTGATCTCTCCCAGCCTGTCTTCCTCCACATTGCTCAATACCATGCCGGCATCGTCCCTATCGCTTATCGGAGGGCTCCGTGTAGGAGAAAGGGTGGAATAAGGTTCACAATCAATGGGCATTCCTACTTCAACTTAGTGCTAATAACGAACGTGGGGGGCGCCGGAGATGTGCGAGCAGTGTCCGTGAAAGGGTCGAGAAGTGGTTGGCAGTCAATGTCGAGAAACTGGGGACAGAACTGGCAGAGCAACAACTATCTCGACGGTCAACCTCTCTCTTTCAAGCTCACTACCAGCGACGGTCGTACACTTGTTTCTAACAACGTGGCTCCTGCCGGTTGGTCCTTCGGACAGACCTTTACCGCCGCCCAATTCCGGTGA 1395 51.4 MLKTPGSYIDLVNINVNLKLVPKPKTQITSFVSNTKQVASTTYPGLVDRLTKSAHFIPGKPTYSTDKWAQLYLEEIIRLHGIPAKIISDRDPRFTSNFWRSLQRALGSQLNFSMTFHPRADGRILTLKRDIRRYVASLHLRLPSGLGHSFAFNGPIRATSPPTPTRGAACPRERDAHRFFTSFAPADQRAEFTRSTTTRSPSRSCAAWTVREACAKMDVDVLFLLAFLSLLSSVEAGGGEWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAAVSSALFKDGLSCGSCYEIKCVGDPKWCLPGSILVTATNFCPPNNALPNNAGGWCNFPLHHFDLSQPVFLHIAQYHAGIVPIAYRRAPCRRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSVKGSRSGWQSMSRNWGQNWQSNNYLDGQPLSFKLTTSDGRTLVSNNVAPAGWSFGQTFTAAQFR 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 57925973 57982283 + Tan0002201.1 Tan02g1456 744082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1456 464 PANTHER EXPANSIN-A15 223 463 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 SUPERFAMILY PHL pollen allergen 368 459 IPR036749 -
Tan02g1456 464 Pfam Lytic transglycolase 276 361 IPR009009 -
Tan02g1456 464 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 381 460 IPR007117 -
Tan02g1456 464 CDD DPBB_EXPA_N 240 366 - -
Tan02g1456 464 SUPERFAMILY Ribonuclease H-like 46 138 IPR012337 -
Tan02g1456 464 PRINTS Expansin/Lol pI family signature 446 460 IPR007118 GO:0005576(InterPro)
Tan02g1456 464 PRINTS Expansin/Lol pI family signature 258 276 IPR007118 GO:0005576(InterPro)
Tan02g1456 464 PRINTS Expansin/Lol pI family signature 280 298 IPR007118 GO:0005576(InterPro)
Tan02g1456 464 PRINTS Expansin/Lol pI family signature 354 370 IPR007118 GO:0005576(InterPro)
Tan02g1456 464 PRINTS Expansin/Lol pI family signature 240 255 IPR007118 GO:0005576(InterPro)
Tan02g1456 464 PRINTS Expansin/Lol pI family signature 408 422 IPR007118 GO:0005576(InterPro)
Tan02g1456 464 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 259 371 IPR007112 -
Tan02g1456 464 FunFam Expansin 231 367 - -
Tan02g1456 464 FunFam Expansin 371 463 - -
Tan02g1456 464 Gene3D - 33 146 IPR036397 GO:0003676(InterPro)
Tan02g1456 464 Gene3D - 229 367 IPR036908 -
Tan02g1456 464 SMART dpbb_1 276 361 IPR007112 -
Tan02g1456 464 Gene3D - 371 463 IPR036749 -
Tan02g1456 464 Pfam Expansin C-terminal domain 372 449 IPR007117 -
Tan02g1456 464 PRINTS Expansin signature 298 309 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 PRINTS Expansin signature 310 320 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 PRINTS Expansin signature 271 285 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 PRINTS Expansin signature 329 346 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 PRINTS Expansin signature 370 382 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 PRINTS Expansin signature 417 438 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 PRINTS Expansin signature 346 359 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 PRINTS Expansin signature 382 403 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 PRINTS Expansin signature 446 462 IPR002963 GO:0009664(InterPro)
Tan02g1456 464 ProSiteProfiles Integrase catalytic domain profile. 18 179 IPR001584 GO:0015074(InterPro)
Tan02g1456 464 SUPERFAMILY Barwin-like endoglucanases 223 389 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1456 Tan-Chr2:57925973 Tan04g1065 Tan-Chr4:9555230 1.60E-122 dispersed
Tan02g1456 Tan-Chr2:57925973 Tan04g1788 Tan-Chr4:52479660 2.30E-65 wgd
Tan02g1456 Tan-Chr2:57925973 Tan07g1188 Tan-Chr7:44094057 3.40E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1456 - - - 0.0