Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1467 ATGGCCGCAGAACCCAATTCCCCTGAATTTTCCTCTGTTTTCGAAACCCTAATCGGAAACAGAGACCTATCTCTCTTCATGCCCTTCCTCTTGGGTTTCTCCAACAACACAGACCCACTTCAAGAATCTCAAAACCCCACCGACCCAGATCAGGCAAACGAAAATCGGAGCGAGAGGATTTTTCTGGTCAACCCTTTTACTCAGAGTATGGTTGTGATTGAGGGGCGTTCGAGCTTGGAAGCGCTTTTGCGCGATTTCGGTGGGAAGGAAGGGCTGCCACCGGCCTCCAAAGCCTCCATAGAAGCGCTTCCGACCGTTCAACTCATGGAAGAGGAATTGCCTTGTGAGTGTGTCATCTGTTTGGATGAGTGGGAAATTGGGGCTGTGGCTAAAGAATTGCCTTGCAAACACAAATTCCATCCCAATTGTATAGAGAAATGGCTTGGGATTCATGGGAACTGTCCTGTTTGTAGGTTCAAACTGCCTGTTGATGGGAAGAAAAACGACGTCGGAGTGAGAGGAAGGAGAGTGAGGGAGATTTGGGTTGGTTTTTCTTTCAATAATGATAGTAGAAGTAATGATTCTAATCGAGTTTCTTCAGATCATGAAGTTGAGGATTAG 621 46.7 MAAEPNSPEFSSVFETLIGNRDLSLFMPFLLGFSNNTDPLQESQNPTDPDQANENRSERIFLVNPFTQSMVVIEGRSSLEALLRDFGGKEGLPPASKASIEALPTVQLMEEELPCECVICLDEWEIGAVAKELPCKHKFHPNCIEKWLGIHGNCPVCRFKLPVDGKKNDVGVRGRRVREIWVGFSFNNDSRSNDSNRVSSDHEVED 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 58663299 58664542 - Tan0011862.1 Tan02g1467 744093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1467 206 SMART ring_2 117 157 IPR001841 -
Tan02g1467 206 Pfam Ring finger domain 116 158 IPR001841 -
Tan02g1467 206 FunFam E3 ubiquitin-protein ligase RNF181 84 164 - -
Tan02g1467 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 164 IPR013083 -
Tan02g1467 206 SUPERFAMILY RING/U-box 102 164 - -
Tan02g1467 206 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Tan02g1467 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 40 162 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1011 Tan-Chr2:14294832 Tan02g1467 Tan-Chr2:58663299 2.50E-08 dispersed
Tan02g1467 Tan-Chr2:58663299 Tan11g0509 Tan-Chr11:4319653 3.20E-27 dispersed
Tan02g1467 Tan-Chr2:58663299 Tan04g1072 Tan-Chr4:9621553 2.70E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1467 - - - 0.0