Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1562 ATGGCTGCTGCAGCTGCAACCACCGGCGAGCAAAGCCACCGCCGATATGCGTCCAAAGTGGGCATAATCGGGGCTGGCATTAGCGGAATCGCCGCCGCCAAGCACCTTTCCGGCCACTGCAGGCCGGTGGTGTTCGAGGCGACGGATTCAATCGGCGGAGTGTGGAAGCACTGCTCTTACCGGACCACCAGGCTGCAGACCCCTCGCCGGGATTTTGAATTCTCCGACTACCGGTGGCCGCCACAGACGACGGAGAATGATGACTTTCCGACGTATTTGGAGGTTTTGGATTATTTGCATGGCTACGCTACGCACTTTGATGTGCTCAAGTTTGTTAAGTTTAACTCCAAAGTGGTCCAACTCCGATACATTGGCGGCCCGGAATCTGAAGATTCTACGGCGGCCGGAGAGTACGGAAGCCTTCTTAATGGTCGTCCCGTTTGGGAGGTCGCTGTTGAAGACACTCAGCTCAACACCATTCAGTGGTATGAATTTGAGATGGTGGTGATATGTGTGGGAAGATATGGAGACATACCAAACATACCAAAATTCCCACCCAACAAAGGTCAAGAGGTTTTCAAAGGCAAGGTTTTGCACTCCATGGACTATGCCAAGCTCCAACACCATGATGCACGTGCCCTACTTCACCACAATCGTGTCGCGGTTATTGGCTTTCGAAAATCTGCCATTGATTTAGCTGTCGAATGTGCTGAAGCAAATCAAGGATCTGAAGGGCAGCCCTGCACAATGGTGATAAGGACACTGCATTGGACAGTCCCATGTTATAGAATATGGGGTTTGCCCTTTTTCTTAAAGGCAATTTCTAAGTTCATAGAGTCATATTTGACATGGAAGTTGCCATTGGAGAAGTATGGGCTAAAGCCAGAGCACCCATTTGAAGAGGACTATGCATCTTGCCAAATGGCAATTTTGCCTGAGAGTTTCTTTAAGGAGGCTGACAAAGGCAAGATTCAGTTCAAAAGGGCATCTAAATGGTGGTTTTGGAGTGGAGGACTTGAATTTGAAGACAACACCAAATTGGAGGCTGATGTTGTCATTCTCAACACTGGTTTTCAAGGCAAACAAAAGCTCCAATCCTTATTGCCTCATCCTTTCAAAAGCCTTTTGGTTGATTCCTCCGGTATCATCCCTTTGTATCGGGGCGTGATTCATCCACTGATACCAAACATGGGGTTTGTGGGATATCTAGAGAGCGTATCTAACATTCGAACAGCAGAGCTCCGGTGCAAGTGGCTGGCAAGATTGGCGGAGGATGGTTTCAAGCTTCCTAGCATCGACAAAATGCTTCAACAAGTTGAAAAAGAGACACAAGTCATGAAAAGAACGACACGTTTCTACAAGCGTCAGTGTGTTTCCACCTTCAGCATTAACTACACTGATGAGATTTTTCAAGATATGGAAAATACTATCAACTAA 1437 47.53 MAAAAATTGEQSHRRYASKVGIIGAGISGIAAAKHLSGHCRPVVFEATDSIGGVWKHCSYRTTRLQTPRRDFEFSDYRWPPQTTENDDFPTYLEVLDYLHGYATHFDVLKFVKFNSKVVQLRYIGGPESEDSTAAGEYGSLLNGRPVWEVAVEDTQLNTIQWYEFEMVVICVGRYGDIPNIPKFPPNKGQEVFKGKVLHSMDYAKLQHHDARALLHHNRVAVIGFRKSAIDLAVECAEANQGSEGQPCTMVIRTLHWTVPCYRIWGLPFFLKAISKFIESYLTWKLPLEKYGLKPEHPFEEDYASCQMAILPESFFKEADKGKIQFKRASKWWFWSGGLEFEDNTKLEADVVILNTGFQGKQKLQSLLPHPFKSLLVDSSGIIPLYRGVIHPLIPNMGFVGYLESVSNIRTAELRCKWLARLAEDGFKLPSIDKMLQQVEKETQVMKRTTRFYKRQCVSTFSINYTDEIFQDMENTIN 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 71374254 71379398 - Tan0011214.1 Tan02g1562 744188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1562 478 Gene3D - 17 188 IPR036188 -
Tan02g1562 478 SUPERFAMILY FAD/NAD(P)-binding domain 301 474 IPR036188 -
Tan02g1562 478 PIRSF FMO 16 478 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Tan02g1562 478 PANTHER DIMETHYLANILINE MONOOXYGENASE 18 474 IPR050346 -
Tan02g1562 478 Gene3D - 189 280 IPR036188 -
Tan02g1562 478 Pfam Flavin-binding monooxygenase-like 18 471 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Tan02g1562 478 SUPERFAMILY FAD/NAD(P)-binding domain 19 240 IPR036188 -
Tan02g1562 478 FunFam Flavin-containing monooxygenase 17 285 - -
Tan02g1562 478 Gene3D - 318 477 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1562 K00485 - - csv:101205746 793.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1562 Tan-Chr2:71374254 Tan09g1035 Tan-Chr9:62541159 2.40E-174 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g187 . . . . . Bpe02g00314 . . . . . . . . . . . Bhi04g01538 Tan02g1562 Cmetu03g0531 . Hepe08g1457 . Lcy13g2236 . . . . . . . Cone4ag1711 Cone7ag1629 . . . . . . Blo17g00265 . . . Bpe14g00290 . . Bma02g00330 . . . . . . . . . . . . . . . . Cla08g00973 Cam08g1422 Cec08g1001 Cco08g1124 Clacu08g1126 . Cre08g0910 Lsi08g00821 . Chy03g00644 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002096 2 2 3 2 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 63