Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1591 ATGGACGGAGGTGCTCCGTACAATCCACGTACCGTCGAAGAGGTGTTTAGGGATTTCAAAGGCCGTAGAGCTGGCTTGATTAAAGCTCTCACTGCTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGATATCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAACTTCCAGAACCTGCACTGGGCATAAATTTTGCTAGAGATGGAATGCAAGAAAAGGATTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTCGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTCGAAGTTGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGAAGTTCTGAACCTCAAATAAAAAGTACAACAAAGGCAGTTCAATCAAAGGATGAGGACGAGGAGGGTTTGGAAGAGGAAGACGAGGAAGAACATGGAGAAACTCTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTCAAGATCACTCCGGCAAGGGCGGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA 765 42.61 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTADVEEFYQQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSTTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 73711944 73716596 + Tan0017994.1 Tan02g1591 744217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1591 254 CDD PHD_AL_plant 200 250 IPR044104 -
Tan02g1591 254 SMART PHD_3 200 248 IPR001965 -
Tan02g1591 254 FunFam PHD finger alfin-like protein 193 249 - -
Tan02g1591 254 Pfam PHD-finger 201 247 IPR019787 -
Tan02g1591 254 MobiDBLite consensus disorder prediction 145 194 - -
Tan02g1591 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Tan02g1591 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Tan02g1591 254 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan02g1591 254 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Tan02g1591 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan02g1591 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Tan02g1591 254 MobiDBLite consensus disorder prediction 145 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1591 Tan-Chr2:73711944 Tan08g0036 Tan-Chr8:494043 2.70E-124 dispersed
Tan02g1591 Tan-Chr2:73711944 Tan02g1592 Tan-Chr2:73711944 4.80E-134 tandem
Tan04g1306 Tan-Chr4:13043317 Tan02g1591 Tan-Chr2:73711944 8.20E-93 transposed
Tan02g1591 Tan-Chr2:73711944 Tan06g0145 Tan-Chr6:1339577 4.90E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26758 PF12165 Alfin 3.40E-69 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1591 K26274 - csv:101208889 458.759