Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1592 ATGGACGGAGGTGCTCCGTACAATCCACGTACCGTCGAAGAGGTGTTTAGGGATTTCAAAGGCCGTAGAGCTGGCTTGATTAAAGCTCTCACTGCTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGATATCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAACTTCCAGAACCTGCACTGGGCATAAATTTTGCTAGAGATGGAATGCAAGAAAAGGATTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTCGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTCGAAGTTGTGACAGGGACAGCCAAAAAACAACGAAGTTCTGAACCTCAAATAAAAAGTACAACAAAGGCAGTTCAATCAAAGGATGAGGACGAGGAGGGTTTGGAAGAGGAAGACGAGGAAGAACATGGAGAAACTCTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTCAAGATCACTCCGGCAAGGGCGGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA 705 43.97 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTADVEEFYQQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQRSSEPQIKSTTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 73711944 73716596 + Tan0017994.2 Tan02g1592 744218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1592 234 MobiDBLite consensus disorder prediction 144 174 - -
Tan02g1592 234 PANTHER CPG BINDING PROTEIN 8 233 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan02g1592 234 SMART PHD_3 180 228 IPR001965 -
Tan02g1592 234 FunFam PHD finger alfin-like protein 173 229 - -
Tan02g1592 234 Pfam PHD-finger 181 227 IPR019787 -
Tan02g1592 234 SUPERFAMILY FYVE/PHD zinc finger 170 231 IPR011011 -
Tan02g1592 234 ProSitePatterns Zinc finger PHD-type signature. 181 227 IPR019786 -
Tan02g1592 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 229 IPR013083 -
Tan02g1592 234 ProSiteProfiles Zinc finger PHD-type profile. 178 230 IPR019787 -
Tan02g1592 234 CDD PHD_AL_plant 180 230 IPR044104 -
Tan02g1592 234 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1592 Tan-Chr2:73711944 Tan08g0036 Tan-Chr8:494043 4.50E-118 dispersed
Tan02g1591 Tan-Chr2:73711944 Tan02g1592 Tan-Chr2:73711944 4.80E-134 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26759 PF12165 Alfin 2.70E-69 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1592 K26274 - csv:101208889 441.425