Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1599 ATGGCCGGCATTGGAGGAAGCAGGCTTCATAAAGCCGCCATTGAAGGCAACGTAACAATGTTGTTAGAGTTGCTCCAACAAGATCCATTAGTATTGCACAGAGTGAGCCTCAACGACCTCAACGAGACTCCTCTTCACGTGGCTGCTCTTCTTGGGCACGTGGGATTTGTGGATGAGATTCTGAAGCGAAGGCCTCAACTAGCCAAAGAGTTGGATTCTTGCGGATCTTCGGCTCTTCACTTGGCGGCTGCCAAAGGGTTTGTGGAAATAGTGAAGCGTTTACTTCAAGTTGATGCTAATATATGCTTATGGTGTGATGCCGATGGGAGTAGCCCTCTCCACCTTGCAGCCATGAGAGGCCATGTTGAGGTCTTGGCTAAGCTCGTCGAAGCCAGACCGATCGCCGCTCGAATTGCTGTGGACGGTGGAACGGTGTTGCATTTATGTGTCAAGCACAACCAGCTGAAGGCTCTCAGAATGTTGATTGAAACCTTGGGAGCTACTGATCACGTTGACGTTAATGGCAAAGATGGGTATGGCTTCACTATCCTCCATTTAGCCGTATCCAATAAACAACTTCAGATGGTGCAATATCTAACATCCGACGGTACTGGAATCGAAGTGAATGCCTTAAACTCAAATAACTGGACAGCCGTAGACATTTTATCTCAAAGCCACAGAGATTTAAAGGACATGGACATCGCAGAGACGCTGAGAGCCGCTGGAGGCATCCAAAAGACAACAACTAACAAACAAACACCAACAATAATAATATCATCATCTTCAAACAAAAAATCCAAAACATTGTGTGGAATTTCACTGGACGTCATTTTCGACAACCAAGACAAAGGGTGGCTTATTAATGGTGCGCCTGGCGGTGTATGGCAAGACGATAATTCCTCAGGGAACAAAACTCATATGGCTGGTACGTCGGTATTTGCAGCAAAACACAATGACAACTACAATGAATTCCTTGCATGTAATACCACAGGATTCACGGCTTCACTGATTGTGATGTTGATGCTCGTCACTGGGTTGCCTTTTAAGCATCCGATTCTTGTGTGGATTCTTATTCTTGCCATGTGGGTTGCAGTGGCTTCCATGGCGGCCACTTATGGAAAAGCTATCAAATTTCTCACTCCGCTTGATTCCAACATGATCATTTATAAGATTTCTATTTTTGTGGCGTTGGCGACTGTTTCTTCGTTGGGTATTTACTTCATTGGGAAGGCTGTCCAACTTCGTTATCTCCTGCCGAGGAAGCTCAATAGCTTAATAATACCGAGACCAGCTGCAAGACACAATGATCATGCTTTGCCCATTGATACACCCTAA 1335 45.47 MAGIGGSRLHKAAIEGNVTMLLELLQQDPLVLHRVSLNDLNETPLHVAALLGHVGFVDEILKRRPQLAKELDSCGSSALHLAAAKGFVEIVKRLLQVDANICLWCDADGSSPLHLAAMRGHVEVLAKLVEARPIAARIAVDGGTVLHLCVKHNQLKALRMLIETLGATDHVDVNGKDGYGFTILHLAVSNKQLQMVQYLTSDGTGIEVNALNSNNWTAVDILSQSHRDLKDMDIAETLRAAGGIQKTTTNKQTPTIIISSSSNKKSKTLCGISLDVIFDNQDKGWLINGAPGGVWQDDNSSGNKTHMAGTSVFAAKHNDNYNEFLACNTTGFTASLIVMLMLVTGLPFKHPILVWILILAMWVAVASMAATYGKAIKFLTPLDSNMIIYKISIFVALATVSSLGIYFIGKAVQLRYLLPRKLNSLIIPRPAARHNDHALPIDTP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 74110624 74113946 - Tan0009879.1 Tan02g1599 744225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1599 444 SMART ANK_2a 179 210 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 SMART ANK_2a 74 103 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 SMART ANK_2a 4 34 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 SMART ANK_2a 141 170 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 SMART ANK_2a 108 137 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 Pfam Ankyrin repeats (many copies) 169 221 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 PANTHER HOMEOBOX PROTEIN WARIAI 8 383 - -
Tan02g1599 444 Gene3D - 3 275 IPR036770 -
Tan02g1599 444 ProSiteProfiles Ankyrin repeat region circular profile. 179 208 - -
Tan02g1599 444 ProSiteProfiles Ankyrin repeat profile. 179 211 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 Pfam Ankyrin repeats (3 copies) 79 164 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 Pfam Domain of unknown function 291 373 IPR026961 -
Tan02g1599 444 ProSiteProfiles Ankyrin repeat profile. 74 101 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 SUPERFAMILY Ankyrin repeat 8 225 IPR036770 -
Tan02g1599 444 ProSiteProfiles Ankyrin repeat region circular profile. 108 130 - -
Tan02g1599 444 ProSiteProfiles Ankyrin repeat profile. 108 130 IPR002110 GO:0005515(InterPro)
Tan02g1599 444 ProSiteProfiles Ankyrin repeat region circular profile. 74 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1599 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1599 Tan-Chr2:74110624 Tan02g1604 Tan-Chr2:74640667 2.50E-16 dispersed
Tan02g1598 Tan-Chr2:74050071 Tan02g1599 Tan-Chr2:74110624 1.30E-63 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58