Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1603 ATGGAATTGAAAACAAAAGGTTCAACACAAAAAAGAATGGCAACCTTAGAAAGCAAGCTTCAAGAAGCAGCAATGGAGGGCAGCGTAGAAAAGCTGCTAGAATTGCTCCAACAAGATCCTCTACTTCTCGACATGGTCGTCGCCGATCCGCCGCTTCATGTCGCTGCCCTTCACGGCCACGCCAATTTTGCCAATGAGATTCTTCGACGAAAGCCGCAGCTGGCTCGAGTATTGGATTCAAAAGGATCATCTCCCCTTCACTTGGCAGCGGCTGAGGGCCATGTTGAAATCGTGATACTTTTGCTGCAAGTGGACTCTACGACTACAACTTGCTTGTTTCGCAATGCAGATGGTTTCAACCCTTTGCAACTTGCCGCCCTGAATGGCCATGTTGATGCCTTGAAAGAGCTCGTCGGGGCCAGGCCGGAAGCTGCCCGAGCCCGAACCGCCGTCGACCGTGGGGGAAACGCCTTGCATTTGTGTGTCAAGAACAATCAGTTGGATGCTTTGAAGGTGCTGGTTATTCATGCCGTAGATGATCAAGGTTTCCTTAATTCTAAAGATGATTTGGGATGCTCTATTCTCCATTTAGCTGTTTCTTACAAACAGATCGAGACAGTAAAATTTCTGGTGAACACAAACGGAATGGAACTGGACAGCCTGCTCACTGCGGAGACACCTGCCGCCGTTACACCGCCGCTGCCACCTCCTGCGGGTCGTTCCGACAGCGAAAATAGCAGCTGGGGGCAGAGATGGTACGAAAACGGAGAGGGCGGCGAGCGGCGGCTGATGAGACAGAGAGAGGCACTGATGGTGGTGGCGTCGGTGGTGGCGACGATGGCTTTTCAGGCGGCAATAAACCCTCCCGACGGCGTGTGGAAAGACGCCGGAAAATCGATGATACACCCTCTTCGATTCAGCTGCTTCGTTGCTTCCATCAGTTTCAGTTTTGTGTTCTCCATTATTGAACTGTTTTTGCTGATGAGTGATTTTGCCTCCACCATTCCCCTTTTCTTGCGTATTCTTTCATATGCAAACATCTTGTCCATTGGAGGGATGGCTGTGGCTTATGGGATTGCAATTTTTTGTTTGACTTAA 1098 50.18 MELKTKGSTQKRMATLESKLQEAAMEGSVEKLLELLQQDPLLLDMVVADPPLHVAALHGHANFANEILRRKPQLARVLDSKGSSPLHLAAAEGHVEIVILLLQVDSTTTTCLFRNADGFNPLQLAALNGHVDALKELVGARPEAARARTAVDRGGNALHLCVKNNQLDALKVLVIHAVDDQGFLNSKDDLGCSILHLAVSYKQIETVKFLVNTNGMELDSLLTAETPAAVTPPLPPPAGRSDSENSSWGQRWYENGEGGERRLMRQREALMVVASVVATMAFQAAINPPDGVWKDAGKSMIHPLRFSCFVASISFSFVFSIIELFLLMSDFASTIPLFLRILSYANILSIGGMAVAYGIAIFCLT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 74434042 74435696 + Tan0018728.1 Tan02g1603 744229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1603 365 MobiDBLite consensus disorder prediction 227 251 - -
Tan02g1603 365 Pfam Ankyrin repeats (many copies) 158 211 IPR002110 GO:0005515(InterPro)
Tan02g1603 365 Coils Coil 6 26 - -
Tan02g1603 365 SMART ANK_2a 117 146 IPR002110 GO:0005515(InterPro)
Tan02g1603 365 SMART ANK_2a 153 183 IPR002110 GO:0005515(InterPro)
Tan02g1603 365 SMART ANK_2a 190 220 IPR002110 GO:0005515(InterPro)
Tan02g1603 365 SMART ANK_2a 47 76 IPR002110 GO:0005515(InterPro)
Tan02g1603 365 SMART ANK_2a 81 111 IPR002110 GO:0005515(InterPro)
Tan02g1603 365 Gene3D - 136 228 IPR036770 -
Tan02g1603 365 Gene3D - 8 135 IPR036770 -
Tan02g1603 365 ProSiteProfiles Ankyrin repeat region circular profile. 81 103 - -
Tan02g1603 365 Pfam Domain of unknown function 262 363 IPR026961 -
Tan02g1603 365 Pfam Ankyrin repeats (3 copies) 52 141 IPR002110 GO:0005515(InterPro)
Tan02g1603 365 PANTHER HOMEOBOX PROTEIN WARIAI 16 334 - -
Tan02g1603 365 SUPERFAMILY Ankyrin repeat 20 213 IPR036770 -
Tan02g1603 365 ProSiteProfiles Ankyrin repeat profile. 81 103 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1603 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1603 Tan-Chr2:74434042 Tan10g2031 Tan-Chr10:64562890 3.10E-09 dispersed
Tan02g1603 Tan-Chr2:74434042 Tan02g1604 Tan-Chr2:74640667 4.80E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014689 0 1 0 0 0 2 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 0 0 1 1 1 1 1 1 0 19