Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1610 ATGGAATGGTGTAATATACTATTGAAATTTAACATAATTGATCCCAATTTTGGATCAAATAAGGAAAATGAGGACACAAAGCGATTTCGTTGGCCGAGAAATTTCCAAGAACCGCCGCTTCGTTCAGGCCATTGTTTCCTCTACGACGGCCATTTTGATGGAGTGGTAATATCTCAATCAATGGGCATCAAGAGAAATAGTAAAAGCTCCGCTTCTGCAACATCTCCATGTGCTGATCTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGTTTGTAAAAGGTCAATGGGATGAAGAACCCTGCGTCTCCGAGTGGCACAAGTACAGATCTTGCCTCTCTGAGCATTTGGAAGATAAGAAGTTGAAGCGTTTCTTGGAAGAGGAAACGCTTCTTCATTCCTCCATGAAAGCTGAGACGAGTTAA 438 42.24 MEWCNILLKFNIIDPNFGSNKENEDTKRFRWPRNFQEPPLRSGHCFLYDGHFDGVVISQSMGIKRNSKSSASATSPCADLRAAYHNCFNRWYSEKFVKGQWDEEPCVSEWHKYRSCLSEHLEDKKLKRFLEEETLLHSSMKAETS 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 74818166 74819894 - Tan0007414.1 Tan02g1610 744236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1610 145 PANTHER TP53-REGULATED INHIBITOR OF APOPTOSIS 1 63 139 IPR007918 GO:0005634(PANTHER)|GO:0005758(PANTHER)|GO:0005829(PANTHER)|GO:0045332(PANTHER)|GO:1990050(PANTHER)
Tan02g1610 145 Pfam Uncharacterised protein family (UPF0203) 72 133 IPR007918 -
Tan02g1610 145 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 74 124 - -
Tan02g1610 145 SUPERFAMILY Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 63 123 IPR036811 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1610 K17968 - - csv:101208159 177.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1610 Tan-Chr2:74818166 Tan02g1611 Tan-Chr2:74818166 1.40E-85 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g120 . . . . . . . . . Cmo12g00592 . . . . Sed08g1786 . . Bhi04g01488 Tan02g1610 Cmetu03g0847 . Hepe08g1408 . Lcy13g2198 . . . . . . . Cone4ag1680 . . . . . . . Blo17g00279 . . Bda13g01592 Bpe14g00272 . . Bma02g00537 . . . . Cma12g00653 . . . . . . . . . . . . . . . . . . . . Chy03g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012856 1 1 1 3 1 0 2 0 0 1 0 0 2 1 1 2 0 2 0 0 1 1 1 1 1 0 1 1 2 1 28