Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1617 ATGGCTGGTATGGCACCTGAAGGAACTCAATTTGATGCACGTCAATATGATTCCAAGATGAATGATTTACTTGGGGGAGATGGCCAAGATTTTTTCACCTCATATGATGAAGTCTATGAAAGTTTTGATTCCATGGGTTTGCAGGAGAACCTCTTAAGAGGAATATACGCTTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGCATTGTTCCCTTCTGTAAGGGACTTGATGTAATCCAACAGGCACAATCTGGGACTGGAAAAACAGCTACTTTCTGTTCTGGAATTTTGCAGCAGCTGGATTATGGGCTAGTTGATTGCCAGTCATTAGTTCTTGCACCCACCCGAGAATTGGCACAACAGATCGAAAAGGTTATGCGTGCATTAGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGAACCAGTGTCCGTGAAGATCAACGCATTCTCTCAAGTGGTGTCCATGTTGTTGTTGGCACCCCTGGTCGTGTGTTTGACATGCTGCGGAGGCAGTCACTTCGCCCCGATCATATTAAGATGTTTGTGCTGGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATCTACGATATTTTCCAGCTTCTTCCACCAAAGATTCAGGTTGGGGTTTTTTCTGCTACAATGCCCCCTGAGGCTCTTGAGATTACAAGGAAATTTATGAATAAACCTGTGCGAATTCTGGTGAAACGTGATGAGCTCACTCTTGAGGGTATCAAGCAATTCTACGTCAACGTTGATAAAGAGGAGTGGAAACTTGAGACCCTTTGCGACCTTTATGAAACTTTGGCAATTACCCAGAGTGTCATATTTGTTAATACTAGGCGCAAAGTAGATTGGCTTACAGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACACATGGAGACATGGACCAAAACACTAGAGATATCATCATGCGGGAGTTTCGATCTGGTTCATCCCGTGTTCTCATTACTACTGATCTCTTGGCCAGAGGAATTGATGTCCAACAAGTTTCTCTTGTGATTAATTATGATCTTCCTACTCAGCCGGAGAATTACCTCCATCGAATCGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCCATCAATTTCGTCACCACAGACGATGAAAGAATGCTGTTTGACATCCAAAAGTTCTACAATGTCATGGTTGAGGAGCTGCCAGCAAATGTTGCCGACCTCATTTGA 1242 44.2 MAGMAPEGTQFDARQYDSKMNDLLGGDGQDFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVMVEELPANVADLI 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 75260681 75262619 + Tan0021004.1 Tan02g1617 744243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1617 413 Gene3D - 249 413 IPR027417 -
Tan02g1617 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Tan02g1617 413 SMART helicmild6 293 374 IPR001650 -
Tan02g1617 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Tan02g1617 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Tan02g1617 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Tan02g1617 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Tan02g1617 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan02g1617 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Tan02g1617 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Tan02g1617 413 SMART ultradead3 59 256 IPR014001 -
Tan02g1617 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Tan02g1617 413 Gene3D - 30 248 IPR027417 -
Tan02g1617 413 CDD SF2_C_DEAD 253 383 - -
Tan02g1617 413 CDD DEADc_EIF4A 45 242 - -
Tan02g1617 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1617 Tan-Chr2:75260681 Tan04g2778 Tan-Chr4:87226522 5.00E-229 dispersed
Tan03g2726 Tan-Chr3:80188778 Tan02g1617 Tan-Chr2:75260681 2.70E-25 transposed
Tan04g2751 Tan-Chr4:86945912 Tan02g1617 Tan-Chr2:75260681 3.50E-51 transposed
Tan09g2300 Tan-Chr9:72918777 Tan02g1617 Tan-Chr2:75260681 2.60E-41 transposed
Tan02g1617 Tan-Chr2:75260681 Tan06g0154 Tan-Chr6:1445857 5.50E-228 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1617 K03257 - vvi:100249159 795.423