Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1669 ATGGAAGATCAGTACAACCCTCATGGTGATAGCTCTAGGGGAAATTTCTTGTACACTTCAGTACCCGTTTTAGCCACCAATTCTTCTTCTCCTGCGGGCAATTTCGTAATTAGATCCTCTTCTTCAAATGGAGGAGCCTCCATTTTTAGCAATAATCAGATGGCCGTAAATAATCTCGCCGGCGACTGTAATTTTCCGCCGTCCGATCAGGAATTCCGACTTGTAAAAGTGGAGCCCAGTGGTTCACAATCTCATCATCATCCTCAACAACAACAACAACAACAACAAGTTCATGATTTTCATTACCATCTAATGAGAGAGTTTCAAATTAGTAGCGGCGGTAGTAGTAACGACGTTGATGCCATGAAAGCTAAAATTATCTCTCACTCTCAATTCTCTAATCTCCTTCAAGCTTTCTTGGATTGCCAAAAGGTCGGAGCTCCGCCGGAGGTGGCGGCGAAACTTGCCACGGTACGGGAGGAATTTGAGGAGCGGCGGCGGTCTTCAATGGCGTCGACTGGGGGTTCTAGTGATCCAGAACTTGATCACTTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAACTGACAAGGCCTATTCAAGAAGCTGCAGATTTCATGCAGAGAATTGAATCTCAGCTCAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGCGACAGAAGAGAAATGTGAAGGAATGGGATCATCATCGGAGGAGGAAGAGAAGGGCGGGGAAGGGGAAAGAGATATAAGGGATCAAATCGACCCACGTGCAGAAGAACGAGAGCTAAAGAATCACTTACTAAAAAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAAGAGCTTTCAAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGACGCAAGGCAAGAGCTACTCCGATGGTGGGAATTACACAACAAATGGCCATACCCATCGGAGGCAGAAAAGTTGGCTCTGGCGGAATCAACTGGTTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAGCCGACTGAGGATGTGCAGTTCATGGGCATGGAGGGGTTTTACCATCCCAATGCTGCTGCTTTTTACTTCGATGCCCATTATATGAGCGATCCCCATTATCGTTTGGGTCCTTGA 1164 45.1 MEDQYNPHGDSSRGNFLYTSVPVLATNSSSPAGNFVIRSSSSNGGASIFSNNQMAVNNLAGDCNFPPSDQEFRLVKVEPSGSQSHHHPQQQQQQQQVHDFHYHLMREFQISSGGSSNDVDAMKAKIISHSQFSNLLQAFLDCQKVGAPPEVAAKLATVREEFEERRRSSMASTGGSSDPELDHFMEAYYGMLVKYREELTRPIQEAADFMQRIESQLNTLCNGSFQILASATEEKCEGMGSSSEEEEKGGEGERDIRDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPTEDVQFMGMEGFYHPNAAAFYFDAHYMSDPHYRLGP 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 77897806 77902408 + Tan0017715.1 Tan02g1669 744295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1669 387 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan02g1669 387 ProSiteProfiles ELK domain profile. 268 288 IPR005539 GO:0003677(InterPro)
Tan02g1669 387 MobiDBLite consensus disorder prediction 238 262 - -
Tan02g1669 387 Pfam ELK domain 268 289 IPR005539 GO:0003677(InterPro)
Tan02g1669 387 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 358 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan02g1669 387 Pfam KNOX2 domain 177 221 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g1669 387 CDD homeodomain 300 351 IPR001356 GO:0003677(InterPro)
Tan02g1669 387 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677(InterPro)
Tan02g1669 387 MobiDBLite consensus disorder prediction 78 97 - -
Tan02g1669 387 ProSitePatterns 'Homeobox' domain signature. 326 349 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan02g1669 387 SMART KNOX2_2 171 222 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g1669 387 SUPERFAMILY Homeodomain-like 289 361 IPR009057 -
Tan02g1669 387 SMART HOX_1 290 355 IPR001356 GO:0003677(InterPro)
Tan02g1669 387 Pfam KNOX1 domain 121 163 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Tan02g1669 387 Gene3D - 285 357 - -
Tan02g1669 387 SMART ELK_2 268 289 IPR005539 GO:0003677(InterPro)
Tan02g1669 387 SMART ELK_2 180 200 IPR005539 GO:0003677(InterPro)
Tan02g1669 387 MobiDBLite consensus disorder prediction 82 97 - -
Tan02g1669 387 MobiDBLite consensus disorder prediction 234 262 - -
Tan02g1669 387 SMART KNOX1_2 120 164 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1669 Tan-Chr2:77897806 Tan04g1268 Tan-Chr4:12193149 2.30E-66 dispersed
Tan01g4652 Tan-Chr1:112415028 Tan02g1669 Tan-Chr2:77897806 8.20E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26767 PF03791 KNOX2 1.20E-23 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1669 - - - 0.0