Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan02g1688 | ATGGGTGGCTCTGGGATTGTATATGAAATGAACTGTTCTTATGGAATTAGCCCTCAGCCATTGTCTGAAAATGCTTCAGAAATGGCATTTGGTTCAGTGTCCTTATTCAAATCTACAGTTGGAGCTGGCACTTCCTTTTCATCTAGTTTTGGAGGTTCTGCAACAGTTCCTCTTGAGAATGAGGGAGTGAAAACTACATCCCACCTTCTTCATGATCCTTCAAGTTTGAGTTCTGATGTGTTTGGAAGTGGGAACTTCTCAGAAATGGTGTGTTCTTTTGGCTTTGTAACTGAAGGTCACCAGAGCCAGATCGCCAATATTAAGTGTCCGTTTAGTTATGTGCCAAATCTGGATGCAGGGGGCAGTGAAGAAGAAAGGCTCTCACTGGAAAATGATGCGAAGGCTCGGCTCGATTGCGCTAATGAAAAGAGAAGAAAATTGACTCTTGATTCCAATTCTTCCAGCCCAAATAAGAATGCTGAAGATAATTTGAATGTGGAACCTACTGAGATTGTATCTGAGACCCTTAATAAAGATGACAAAATTCTGAAAGTTGAGCATAGAATATGTGAAAATTTTAACACCAAATCAGATGGCAAACAAGTTAAAGGAGGCTCTCAAAGTGTACAAGCCCCTAAGGAGAATTATATTCATGTTCGAGCCCGACGAGGCCGAGCTACTAATAGCCATAGCCTTGCAGAAAGGGTTAGGAGGGAAAAGATCGGTGAACGAATGAAGTTGCTGCAAGAGCTTGTTCCTGGGTGCAATCAGATTACCGGAAAAACCGTCGTGCTCGATGAAATTATCAATTATGTACAATCACTGCAACAACAAGTTGAGTTTTTATCGATGAAACTCGCTAATGTTGGTCCAGAATCAGACTTGGATACAGAGCAGATACGGCTCACAAATAACTCTTATATTTCGTCATCGAATATTCTTCGTACAAAAGGCGAAGGCGTCGACAGCGTTCTTGCAATCGATCCTAGATTAACCACATCTCACACAACTCCTCATGCTCTGTTTCAACTTCATGGAACAATACCAACCATTTCAAGAACCACTCAAAAACTTTCTAGCCTTTCCAAGATGAAACGATAA | 1101 | 41.33 | MGGSGIVYEMNCSYGISPQPLSENASEMAFGSVSLFKSTVGAGTSFSSSFGGSATVPLENEGVKTTSHLLHDPSSLSSDVFGSGNFSEMVCSFGFVTEGHQSQIANIKCPFSYVPNLDAGGSEEERLSLENDAKARLDCANEKRRKLTLDSNSSSPNKNAEDNLNVEPTEIVSETLNKDDKILKVEHRICENFNTKSDGKQVKGGSQSVQAPKENYIHVRARRGRATNSHSLAERVRREKIGERMKLLQELVPGCNQITGKTVVLDEIINYVQSLQQQVEFLSMKLANVGPESDLDTEQIRLTNNSYISSSNILRTKGEGVDSVLAIDPRLTTSHTTPHALFQLHGTIPTISRTTQKLSSLSKMKR | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 79311745 | 79314172 | - | Tan0016893.1 | Tan02g1688 | 744314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan02g1688 | 366 | MobiDBLite | consensus disorder prediction | 146 | 165 | - | - | |
Tan02g1688 | 366 | Pfam | Helix-loop-helix DNA-binding domain | 228 | 276 | IPR011598 | GO:0046983(InterPro) | |
Tan02g1688 | 366 | FunFam | Basic helix-loop-helix transcription factor | 222 | 294 | - | - | |
Tan02g1688 | 366 | CDD | bHLH_AtBPE_like | 215 | 300 | - | - | |
Tan02g1688 | 366 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 126 | 312 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Tan02g1688 | 366 | MobiDBLite | consensus disorder prediction | 150 | 165 | - | - | |
Tan02g1688 | 366 | SMART | finulus | 231 | 281 | IPR011598 | GO:0046983(InterPro) | |
Tan02g1688 | 366 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 223 | 289 | IPR036638 | GO:0046983(InterPro) | |
Tan02g1688 | 366 | Coils | Coil | 130 | 150 | - | - | |
Tan02g1688 | 366 | Gene3D | - | 222 | 294 | IPR036638 | GO:0046983(InterPro) | |
Tan02g1688 | 366 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 225 | 275 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4662 | Tan-Chr1:112598895 | Tan02g1688 | Tan-Chr2:79311745 | 6.30E-50 | dispersed | |
Tan02g1688 | Tan-Chr2:79311745 | Tan04g0941 | Tan-Chr4:8332786 | 3.60E-37 | dispersed | |
Tan02g1688 | Tan-Chr2:79311745 | Tan02g1689 | Tan-Chr2:79311745 | 3.70E-167 | tandem | |
Tan01g4661 | Tan-Chr1:112598895 | Tan02g1688 | Tan-Chr2:79311745 | 8.90E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26769 | PF00010 | HLH | 2.80E-05 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan02g1688 | - | - | - | 0.0 |