Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1688 ATGGGTGGCTCTGGGATTGTATATGAAATGAACTGTTCTTATGGAATTAGCCCTCAGCCATTGTCTGAAAATGCTTCAGAAATGGCATTTGGTTCAGTGTCCTTATTCAAATCTACAGTTGGAGCTGGCACTTCCTTTTCATCTAGTTTTGGAGGTTCTGCAACAGTTCCTCTTGAGAATGAGGGAGTGAAAACTACATCCCACCTTCTTCATGATCCTTCAAGTTTGAGTTCTGATGTGTTTGGAAGTGGGAACTTCTCAGAAATGGTGTGTTCTTTTGGCTTTGTAACTGAAGGTCACCAGAGCCAGATCGCCAATATTAAGTGTCCGTTTAGTTATGTGCCAAATCTGGATGCAGGGGGCAGTGAAGAAGAAAGGCTCTCACTGGAAAATGATGCGAAGGCTCGGCTCGATTGCGCTAATGAAAAGAGAAGAAAATTGACTCTTGATTCCAATTCTTCCAGCCCAAATAAGAATGCTGAAGATAATTTGAATGTGGAACCTACTGAGATTGTATCTGAGACCCTTAATAAAGATGACAAAATTCTGAAAGTTGAGCATAGAATATGTGAAAATTTTAACACCAAATCAGATGGCAAACAAGTTAAAGGAGGCTCTCAAAGTGTACAAGCCCCTAAGGAGAATTATATTCATGTTCGAGCCCGACGAGGCCGAGCTACTAATAGCCATAGCCTTGCAGAAAGGGTTAGGAGGGAAAAGATCGGTGAACGAATGAAGTTGCTGCAAGAGCTTGTTCCTGGGTGCAATCAGATTACCGGAAAAACCGTCGTGCTCGATGAAATTATCAATTATGTACAATCACTGCAACAACAAGTTGAGTTTTTATCGATGAAACTCGCTAATGTTGGTCCAGAATCAGACTTGGATACAGAGCAGATACGGCTCACAAATAACTCTTATATTTCGTCATCGAATATTCTTCGTACAAAAGGCGAAGGCGTCGACAGCGTTCTTGCAATCGATCCTAGATTAACCACATCTCACACAACTCCTCATGCTCTGTTTCAACTTCATGGAACAATACCAACCATTTCAAGAACCACTCAAAAACTTTCTAGCCTTTCCAAGATGAAACGATAA 1101 41.33 MGGSGIVYEMNCSYGISPQPLSENASEMAFGSVSLFKSTVGAGTSFSSSFGGSATVPLENEGVKTTSHLLHDPSSLSSDVFGSGNFSEMVCSFGFVTEGHQSQIANIKCPFSYVPNLDAGGSEEERLSLENDAKARLDCANEKRRKLTLDSNSSSPNKNAEDNLNVEPTEIVSETLNKDDKILKVEHRICENFNTKSDGKQVKGGSQSVQAPKENYIHVRARRGRATNSHSLAERVRREKIGERMKLLQELVPGCNQITGKTVVLDEIINYVQSLQQQVEFLSMKLANVGPESDLDTEQIRLTNNSYISSSNILRTKGEGVDSVLAIDPRLTTSHTTPHALFQLHGTIPTISRTTQKLSSLSKMKR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79311745 79314172 - Tan0016893.1 Tan02g1688 744314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1688 366 MobiDBLite consensus disorder prediction 146 165 - -
Tan02g1688 366 Pfam Helix-loop-helix DNA-binding domain 228 276 IPR011598 GO:0046983(InterPro)
Tan02g1688 366 FunFam Basic helix-loop-helix transcription factor 222 294 - -
Tan02g1688 366 CDD bHLH_AtBPE_like 215 300 - -
Tan02g1688 366 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 126 312 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan02g1688 366 MobiDBLite consensus disorder prediction 150 165 - -
Tan02g1688 366 SMART finulus 231 281 IPR011598 GO:0046983(InterPro)
Tan02g1688 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 289 IPR036638 GO:0046983(InterPro)
Tan02g1688 366 Coils Coil 130 150 - -
Tan02g1688 366 Gene3D - 222 294 IPR036638 GO:0046983(InterPro)
Tan02g1688 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 275 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4662 Tan-Chr1:112598895 Tan02g1688 Tan-Chr2:79311745 6.30E-50 dispersed
Tan02g1688 Tan-Chr2:79311745 Tan04g0941 Tan-Chr4:8332786 3.60E-37 dispersed
Tan02g1688 Tan-Chr2:79311745 Tan02g1689 Tan-Chr2:79311745 3.70E-167 tandem
Tan01g4661 Tan-Chr1:112598895 Tan02g1688 Tan-Chr2:79311745 8.90E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26769 PF00010 HLH 2.80E-05 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1688 - - - 0.0