Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1689 ATGGGTGGCTCTGGGATTGTATATGAAATGAACTGTTCTTATGGAATTAGCCCTCAGCCATTGTCTGAAAATGCTTCAGAAATGGCATTTGGTTCAGTGTCCTTATTCAAATCTACAGTTGGAGCTGGCACTTCCTTTTCATCTAGTTTTGGAGGTTCTGCAACAGTTCCTCTTGAGAATGAGGGAGTGAAAACTACATCCCACCTTCTTCATGATCCTTCAAGTTTGAGTTCTGATGTGTTTGGAAGTGGGAACTTCTCAGAAATGGTGTGTTCTTTTGGCTTTGTAACTGAAGGTCACCAGAGCCAGATCGCCAATATTAAGTGTCCGTTTAGTTATGTGCCAAATCTGGATGCAGGGGGCAGTGAAGAAGAAAGGCTCTCACTGGAAAATGATGCGAAGGCTCGGCTCGATTGCGCTAATGAAAAGAGAAGAAAATTGACTCTTGATTCCAATTCTTCCAGCCCAAATAAGAATGCTGAAGATAATTTGAATGTGGAACCTACTGAGATTGTATCTGAGACCCTTAATAAAGATGACAAAATTCTGAAAGTTGAGCATAGAATATGTGAAAATTTTAACACCAAATCAGATGGCAAACAAGTTAAAGGAGGCTCTCAAAGTGTACAAGCCCCTAAGGAGAATTATATTCATGTTCGAGCCCGACGAGGCCGAGCTACTAATAGCCATAGCCTTGCAGAAAGGGTTAGGAGGGAAAAGATCGGTGAACGAATGAAGTTGCTGCAAGAGCTTGTTCCTGGGTGCAATCAGATTACCGGAAAAACCGTCGTGCTCGATGAAATTATCAATTATGTACAATCACTGCAACAACAAGTTGAGTTTTTATCGATGAAACTCGCTAATGTTGGTCCAGAATCAGACTTGGATACAGAGCAGATACGGCTCACAAATGTAAGTTCTAAGGTTATCTTGTATGTTTCAGAACTTGATCTGTTTTAG 960 41.15 MGGSGIVYEMNCSYGISPQPLSENASEMAFGSVSLFKSTVGAGTSFSSSFGGSATVPLENEGVKTTSHLLHDPSSLSSDVFGSGNFSEMVCSFGFVTEGHQSQIANIKCPFSYVPNLDAGGSEEERLSLENDAKARLDCANEKRRKLTLDSNSSSPNKNAEDNLNVEPTEIVSETLNKDDKILKVEHRICENFNTKSDGKQVKGGSQSVQAPKENYIHVRARRGRATNSHSLAERVRREKIGERMKLLQELVPGCNQITGKTVVLDEIINYVQSLQQQVEFLSMKLANVGPESDLDTEQIRLTNVSSKVILYVSELDLF 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 79311745 79314172 - Tan0016893.2 Tan02g1689 744315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1689 319 MobiDBLite consensus disorder prediction 146 165 - -
Tan02g1689 319 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 125 300 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan02g1689 319 CDD bHLH_AtBPE_like 215 300 - -
Tan02g1689 319 MobiDBLite consensus disorder prediction 150 165 - -
Tan02g1689 319 SMART finulus 231 281 IPR011598 GO:0046983(InterPro)
Tan02g1689 319 FunFam Basic helix-loop-helix transcription factor 222 294 - -
Tan02g1689 319 Coils Coil 130 150 - -
Tan02g1689 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 275 IPR011598 GO:0046983(InterPro)
Tan02g1689 319 Pfam Helix-loop-helix DNA-binding domain 228 276 IPR011598 GO:0046983(InterPro)
Tan02g1689 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 289 IPR036638 GO:0046983(InterPro)
Tan02g1689 319 Gene3D - 222 294 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4661 Tan-Chr1:112598895 Tan02g1689 Tan-Chr2:79311745 1.00E-45 dispersed
Tan02g1689 Tan-Chr2:79311745 Tan11g1640 Tan-Chr11:15877923 5.30E-37 dispersed
Tan02g1688 Tan-Chr2:79311745 Tan02g1689 Tan-Chr2:79311745 3.70E-167 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26770 PF00010 HLH 2.30E-05 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1689 - - - 0.0