Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g1715 ATGCCGATGTACCAGCCTTCTACTTGGAGAGAAGGGGATCCCAAGCTCGTTGTGGGTTGCGGAGCGCAGATTCTAGATCTGGAAACTGTCGTCAAAGATGGGATTCTAGGCGGCGGCGGCGGCGGTGGCCTCATCTCCGGCGGCGGTGCTGAGAAATTAGATCTGAAGGAGATGATTGAGGAGCTAGAATCGTCGATAGAGGTCCCGTCCGTGTTCATTTGCCCAATTTCGCTCGAGCCGATGCAAGATCCGGTAACCCTCTGCTCCGGCCAGACCTACGAGCGGTCCAACATTCTGAAATGGTTCTCTTTAGGGCATTTAACCTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTACACCAGTTGATTCACACCTGGTTTTCGCAGAAGTATTTAGCATTGAAGAAGAGATCAGAGGACGTGCAGGGGAGAGTTTTAGAGCTTTTAGATTCGTTGAAGAAGGTCAAAGGCCAAGCTAGGGTTCAGTCCCTGAAAGATCTCCGACATGTCGTCACCGCCCATTCCTCCGCCAAGAAGATGGTGGTCGACAATGGCGGTGTCGCTCTAATCTCCTCTCTTTTGGGTTCGTTCACTTCCCACGCTGTTGGGTCCGAAGCCGTGGGGATCCTCGTGAATTTGGATCTCGATTCGGAGTTGAAGAAGAATCTGATTCAACCCACGAGAATATCCCTAATTGCAGATATTTTAAACGAAGGCTCCATCGAAACCAAGATCAATTGCACGAAATTCTTCAAGATGCTGATGGAGGGTAACGATTTAAGAACAGAGAACCTTTCAAGTTTGAGCCTATTGGTGGGATTGTTGAGAATGGTGAAGGATCGGAGACACCCAAATGGAGTAACCGCCGGACTCAGTTTACTCCGAACGCTCTGTTCAAGCGAACCCATCAGAAAGCAACTCGTAAGCATCGGTGCCGTAGCGAAACTCGGCGGCGCCCTCTCCGGTTTAAACGCCGATTGCTTGGAATCGGCGCTCTATATTCTCGACGTTTTATCGTCTCTTCCAGAGGGAAGATTAGCGTTGAAAGACTGTGAAGATACGATTAGGAATTTGGTGAAATTGTTGATGAAAGTATCTGAGATTTGTACTCAATTCGCGTTGTCGATTTTGTGGGCGGTTTTCAAGTTAGCGCCGGAAGAATGTGCGGTGCTTGCGGTGGAGGCGGGATTGGCGGCGAAGCTGCTGCTTGTGATACAAAGTGGGTGCAATAAAGAGCTAAAACAGAGATCTTCTGAGCTATTGAAATTGTGTAGTCTAAATTACCCAGATTCTATCTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1359 48.57 MPMYQPSTWREGDPKLVVGCGAQILDLETVVKDGILGGGGGGGLISGGGAEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTAHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFFKMLMEGNDLRTENLSSLSLLVGLLRMVKDRRHPNGVTAGLSLLRTLCSSEPIRKQLVSIGAVAKLGGALSGLNADCLESALYILDVLSSLPEGRLALKDCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAVLAVEAGLAAKLLLVIQSGCNKELKQRSSELLKLCSLNYPDSIFISKCKLTRTIQ 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 80165672 80167753 - Tan0019398.1 Tan02g1715 744341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g1715 452 CDD RING-Ubox_PUB 69 121 IPR045210 -
Tan02g1715 452 Gene3D - 141 449 IPR011989 -
Tan02g1715 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 140 IPR013083 -
Tan02g1715 452 PANTHER WDSAM1 PROTEIN 64 445 IPR045185 GO:0061630(InterPro)
Tan02g1715 452 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g1715 452 SUPERFAMILY ARM repeat 238 440 IPR016024 -
Tan02g1715 452 SMART Ubox_2 71 134 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g1715 452 Pfam U-box domain 68 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan02g1715 452 SUPERFAMILY ARM repeat 156 268 IPR016024 -
Tan02g1715 452 SUPERFAMILY RING/U-box 64 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1715 Tan-Chr2:80165672 Tan10g0424 Tan-Chr10:3409047 3.50E-26 dispersed
Tan03g1327 Tan-Chr3:69777159 Tan02g1715 Tan-Chr2:80165672 1.10E-34 transposed
Tan01g4675 Tan-Chr1:112695814 Tan02g1715 Tan-Chr2:80165672 1.20E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g1715 - - - 0.0